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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_LG_XI3607
AT1G53310
Q9MAH0
4.1.15
glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)
1.430902153
0.002863472
ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); phosphoenolpyruvate carboxylase
Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.
estExt_Genewise1_v1.C_LG_XII1497
AT1G27400
Q93VI3
29.2.1.2.2.17
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17
1.441699055
0.000386615
60S ribosomal protein L17 (RPL17A)
eugene3.00050110
AT5G65300
Q9FKQ7
35.2
not assigned.unknown
1.456165683
0.002185984
estExt_Genewise1_v1.C_LG_XV2068
AT1G67430
P51413
29.2.1.2.2.17
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17
1.458462271
0.000271445
60S ribosomal protein L17 (RPL17B)
grail3.0189002602
AT1G26910
Q08770
29.2.1.2.2.10
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10
1.465692473
0.000935965
60S ribosomal protein L10 (RPL10B)
estExt_Genewise1_v1.C_LG_XI1233
AT3G21690
Q9LVD9
34.99
transport.misc
1.466539931
0.00042043
MATE efflux family protein
estExt_fgenesh4_pm.C_LG_XVI0442
AT4G33070
O82647
5.2
fermentation.PDC
1.470152826
0.000443402
pyruvate decarboxylase, putative
grail3.3669000101
AT1G04480
Q593H7
29.2.1.2.2.23
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23
1.48618676
0.000372732
60S ribosomal protein L23 (RPL23A)
gw1.II.1386.1
AT1G21890
F4HZQ7
33.99
development.unspecified
1.498859719
0.001425312
nodulin MtN21 family protein
eugene3.01850021
AT3G14840
C0LGN2
30.2.8.2
signalling.receptor kinases.leucine rich repeat VIII.VIII-2
1.503611383
0.001121379
leucine-rich repeat family protein / protein kinase family protein
estExt_fgenesh4_pg.C_LG_VI1248
AT2G42740
P42795
29.2.1.2.2.16
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L16
1.528727167
0.001643481
RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome
encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.
estExt_fgenesh4_pm.C_LG_I0036
AT3G49120
Q9SMU8
26.12
misc.peroxidases
1.536639456
0.000635615
ATPCB/ATPERX34/PERX34/PRXCB (PEROXIDASE 34); peroxidase
Class III peroxidase Perx34. Expressed in roots, leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response.
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