Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_Genewise1_v1.C_LG_XI3607 | AT1G53310 | Q9MAH0 | 4.1.15 | glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC) | 1.430902153 | 0.002863472 | ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); phosphoenolpyruvate carboxylase | Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. |
estExt_Genewise1_v1.C_LG_XII1497 | AT1G27400 | Q93VI3 | 29.2.1.2.2.17 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17 | 1.441699055 | 0.000386615 | 60S ribosomal protein L17 (RPL17A) | |
eugene3.00050110 | AT5G65300 | Q9FKQ7 | 35.2 | not assigned.unknown | 1.456165683 | 0.002185984 | ||
estExt_Genewise1_v1.C_LG_XV2068 | AT1G67430 | P51413 | 29.2.1.2.2.17 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17 | 1.458462271 | 0.000271445 | 60S ribosomal protein L17 (RPL17B) | |
grail3.0189002602 | AT1G26910 | Q08770 | 29.2.1.2.2.10 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10 | 1.465692473 | 0.000935965 | 60S ribosomal protein L10 (RPL10B) | |
estExt_Genewise1_v1.C_LG_XI1233 | AT3G21690 | Q9LVD9 | 34.99 | transport.misc | 1.466539931 | 0.00042043 | MATE efflux family protein | |
estExt_fgenesh4_pm.C_LG_XVI0442 | AT4G33070 | O82647 | 5.2 | fermentation.PDC | 1.470152826 | 0.000443402 | pyruvate decarboxylase, putative | |
grail3.3669000101 | AT1G04480 | Q593H7 | 29.2.1.2.2.23 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L23 | 1.48618676 | 0.000372732 | 60S ribosomal protein L23 (RPL23A) | |
gw1.II.1386.1 | AT1G21890 | F4HZQ7 | 33.99 | development.unspecified | 1.498859719 | 0.001425312 | nodulin MtN21 family protein | |
eugene3.01850021 | AT3G14840 | C0LGN2 | 30.2.8.2 | signalling.receptor kinases.leucine rich repeat VIII.VIII-2 | 1.503611383 | 0.001121379 | leucine-rich repeat family protein / protein kinase family protein | |
estExt_fgenesh4_pg.C_LG_VI1248 | AT2G42740 | P42795 | 29.2.1.2.2.16 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L16 | 1.528727167 | 0.001643481 | RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome | encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. |
estExt_fgenesh4_pm.C_LG_I0036 | AT3G49120 | Q9SMU8 | 26.12 | misc.peroxidases | 1.536639456 | 0.000635615 | ATPCB/ATPERX34/PERX34/PRXCB (PEROXIDASE 34); peroxidase | Class III peroxidase Perx34. Expressed in roots, leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. |