Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_Genewise1_v1.C_LG_XIV0433 | AT3G20000 | Q9LHE5 | 29.3.2 | protein.targeting.mitochondria | 1.379395035 | 0.002495933 | TOM40 (translocase of the outer mitochondrial membrane 40); voltage-gated ion-selective channel | Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore. |
gw1.1574.2.1 | AT5G47220 | O80338 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 1.381652974 | 0.003412573 | ATERF-2/ATERF2/ERF2 (ETHYLENE RESPONSE FACTOR 2); DNA binding / transcription factor/ transcriptional activator | Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box?dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation. |
grail3.0049030302 | AT4G00430 | Q39196 | 34.19.1 | transport.Major Intrinsic Proteins.PIP | 1.387771061 | 0.002357108 | TMP-C (plasma membrane intrinsic protein 1;4); water channel | a member of the plasma membrane intrinsic protein subfamily PIP1. |
estExt_fgenesh4_pg.C_LG_V0222 | AT3G49910 | P51414 | 29.2.1.2.2.26 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L26 | 1.388400985 | 0.000477631 | 60S ribosomal protein L26 (RPL26A) | |
eugene3.00130015 | AT3G05880 | Q9ZNQ7 | 20.2.3 | stress.abiotic.drought/salt | 1.408500703 | 0.001689303 | RCI2A (RARE-COLD-INDUCIBLE 2A) | Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains. |
eugene3.00041172 | AT4G34490 | O65902 | 28.99 | DNA.unspecified | 1.410207558 | 0.001182988 | ATCAP1 (CYCLASE ASSOCIATED PROTEIN 1) | CYCLASE ASSOCIATED PROTEIN |
estExt_fgenesh4_pm.C_860049 | AT5G61510 | Q9FKG8 | 26.7 | misc.oxidases - copper, flavone etc | 1.411754432 | 0.00025816 | NADP-dependent oxidoreductase, putative | |
eugene3.00020474 | AT1G22780 | 29.2.1.2.1.18 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S18 | 1.4182236 | 0.000861749 | PFL (POINTED FIRST LEAVES); structural constituent of ribosome | S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation. | |
estExt_Genewise1_v1.C_LG_VII0556 | AT3G15210 | O80340 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 1.42123979 | 0.003152452 | ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcriptional repressor | Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. |
estExt_Genewise1_v1.C_LG_XVI2622 | AT3G09630 | Q9SF40 | 29.2.1.2.2.141 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L4/L1 | 1.421494431 | 0.000442876 | 60S ribosomal protein L4/L1 (RPL4A) | |
eugene3.00012943 | AT1G33120 | 29.2.1.2.2.9 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9 | 1.429950525 | 0.000405049 | 60S ribosomal protein L9 (RPL90B) | ||
estExt_Genewise1_v1.C_LG_XIV3883 | AT3G07600 | Q9SSF0 | 15 | metal handling | 1.430736216 | 0.000296379 | heavy-metal-associated domain-containing protein |