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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_LG_XIV0433
AT3G20000
Q9LHE5
29.3.2
protein.targeting.mitochondria
1.379395035
0.002495933
TOM40 (translocase of the outer mitochondrial membrane 40); voltage-gated ion-selective channel
Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.
gw1.1574.2.1
AT5G47220
O80338
17.5.2
hormone metabolism.ethylene.signal transduction
1.381652974
0.003412573
ATERF-2/ATERF2/ERF2 (ETHYLENE RESPONSE FACTOR 2); DNA binding / transcription factor/ transcriptional activator
Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box?dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation.
grail3.0049030302
AT4G00430
Q39196
34.19.1
transport.Major Intrinsic Proteins.PIP
1.387771061
0.002357108
TMP-C (plasma membrane intrinsic protein 1;4); water channel
a member of the plasma membrane intrinsic protein subfamily PIP1.
estExt_fgenesh4_pg.C_LG_V0222
AT3G49910
P51414
29.2.1.2.2.26
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L26
1.388400985
0.000477631
60S ribosomal protein L26 (RPL26A)
eugene3.00130015
AT3G05880
Q9ZNQ7
20.2.3
stress.abiotic.drought/salt
1.408500703
0.001689303
RCI2A (RARE-COLD-INDUCIBLE 2A)
Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains.
eugene3.00041172
AT4G34490
O65902
28.99
DNA.unspecified
1.410207558
0.001182988
ATCAP1 (CYCLASE ASSOCIATED PROTEIN 1)
CYCLASE ASSOCIATED PROTEIN
estExt_fgenesh4_pm.C_860049
AT5G61510
Q9FKG8
26.7
misc.oxidases - copper, flavone etc
1.411754432
0.00025816
NADP-dependent oxidoreductase, putative
eugene3.00020474
AT1G22780
29.2.1.2.1.18
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S18
1.4182236
0.000861749
PFL (POINTED FIRST LEAVES); structural constituent of ribosome
S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.
estExt_Genewise1_v1.C_LG_VII0556
AT3G15210
O80340
17.5.2
hormone metabolism.ethylene.signal transduction
1.42123979
0.003152452
ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcriptional repressor
Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.
estExt_Genewise1_v1.C_LG_XVI2622
AT3G09630
Q9SF40
29.2.1.2.2.141
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L4/L1
1.421494431
0.000442876
60S ribosomal protein L4/L1 (RPL4A)
eugene3.00012943
AT1G33120
29.2.1.2.2.9
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L9
1.429950525
0.000405049
60S ribosomal protein L9 (RPL90B)
estExt_Genewise1_v1.C_LG_XIV3883
AT3G07600
Q9SSF0
15
metal handling
1.430736216
0.000296379
heavy-metal-associated domain-containing protein
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