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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
fgenesh4_pg.C_LG_II000941
AT2G14095
Q8S8A5
35.2
not assigned.unknown
1.338419452
0.001395476
eugene3.00181232
AT3G13580
Q9LHP1
29.2.1.2.2.7
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7
1.339637277
0.000257585
60S ribosomal protein L7 (RPL7D)
estExt_fgenesh4_pg.C_1650014
AT3G62870
Q9LZH9
29.2.1.2.2.57
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A
1.348366041
0.000410918
60S ribosomal protein L7A (RPL7aB)
estExt_fgenesh4_pg.C_8990003
AT1G17180
Q9SHH7
26.9
misc.glutathione S transferases
1.349725832
0.002850339
ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
grail3.0038019202
AT1G65930
Q9SRZ6
8.1.4
TCA / org transformation.TCA.IDH
1.351896141
0.000405758
isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative
gw1.I.3503.1
AT5G48760
Q9FKC0
29.2.1.2.2.513
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A
1.368480909
0.001166512
60S ribosomal protein L13A (RPL13aD)
gw1.XVI.1998.1
AT3G11940
P51427
29.2.1.2.1.5
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S5
1.369729191
0.000217651
ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome
One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant.
eugene3.00151093
AT2G36530
P25696
4.1.13
glycolysis.cytosolic branch.enolase
1.370375607
0.000342052
LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase
Involved in light-dependent cold tolerance and encodes an enolase.
estExt_Genewise1_v1.C_1460016
AT3G14940
Q84VW9
4.1.15
glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC)
1.371823311
0.002225546
ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase
One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.
gw1.XIII.1296.1
AT1G24140
Q5XF51
29.5.7
protein.degradation.metalloprotease
1.373117919
0.002453274
matrixin family protein
eugene3.00440214
AT5G37310
Q9FHT4
28.99
DNA.unspecified
1.376707447
0.000738014
transporter
estExt_fgenesh4_pg.C_1970027
AT5G24090
P19172
20.1.7
stress.biotic.PR-proteins
1.379390604
0.000182448
acidic endochitinase (CHIB1)
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