Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
fgenesh4_pg.C_LG_II000941 | AT2G14095 | Q8S8A5 | 35.2 | not assigned.unknown | 1.338419452 | 0.001395476 | ||
eugene3.00181232 | AT3G13580 | Q9LHP1 | 29.2.1.2.2.7 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7 | 1.339637277 | 0.000257585 | 60S ribosomal protein L7 (RPL7D) | |
estExt_fgenesh4_pg.C_1650014 | AT3G62870 | Q9LZH9 | 29.2.1.2.2.57 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A | 1.348366041 | 0.000410918 | 60S ribosomal protein L7A (RPL7aB) | |
estExt_fgenesh4_pg.C_8990003 | AT1G17180 | Q9SHH7 | 26.9 | misc.glutathione S transferases | 1.349725832 | 0.002850339 | ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25); glutathione transferase | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). |
grail3.0038019202 | AT1G65930 | Q9SRZ6 | 8.1.4 | TCA / org transformation.TCA.IDH | 1.351896141 | 0.000405758 | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative | |
gw1.I.3503.1 | AT5G48760 | Q9FKC0 | 29.2.1.2.2.513 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13A | 1.368480909 | 0.001166512 | 60S ribosomal protein L13A (RPL13aD) | |
gw1.XVI.1998.1 | AT3G11940 | P51427 | 29.2.1.2.1.5 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S5 | 1.369729191 | 0.000217651 | ATRPS5A (RIBOSOMAL PROTEIN 5A); structural constituent of ribosome | One of two genes encoding the ribosomal protein S5. Mutants have semi-dominant developmental phenotypes. Most cell-division processes are delayed or disturbed in the heterozygous mutant, and development is completely arrested at an early embryonic stage in the homozygous mutant. |
eugene3.00151093 | AT2G36530 | P25696 | 4.1.13 | glycolysis.cytosolic branch.enolase | 1.370375607 | 0.000342052 | LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase | Involved in light-dependent cold tolerance and encodes an enolase. |
estExt_Genewise1_v1.C_1460016 | AT3G14940 | Q84VW9 | 4.1.15 | glycolysis.cytosolic branch.phospho-enol-pyruvate carboxylase (PEPC) | 1.371823311 | 0.002225546 | ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase | One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. |
gw1.XIII.1296.1 | AT1G24140 | Q5XF51 | 29.5.7 | protein.degradation.metalloprotease | 1.373117919 | 0.002453274 | matrixin family protein | |
eugene3.00440214 | AT5G37310 | Q9FHT4 | 28.99 | DNA.unspecified | 1.376707447 | 0.000738014 | transporter | |
estExt_fgenesh4_pg.C_1970027 | AT5G24090 | P19172 | 20.1.7 | stress.biotic.PR-proteins | 1.379390604 | 0.000182448 | acidic endochitinase (CHIB1) |