Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
grail3.0202001702 | AT1G79040 | P27202 | 1.1.1.2 | PS.lightreaction.photosystem II.PSII polypeptide subunits | -1.572120639 | 0.00321575 | PSBR (photosystem II subunit R) | Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ. |
eugene3.00091004 | AT2G42280 | Q66GR3 | 27.3.6 | RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family | -1.571338212 | 0.000341683 | basic helix-loop-helix (bHLH) family protein | |
estExt_fgenesh4_pg.C_LG_XIV0805 | AT3G26650 | P25856 | 1.3.4 | PS.calvin cycle.GAP | -1.562120185 | 0.0030979 | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase | Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecular complex with phosphoribulokinase (PRK) thought to be linked by a small peptide encoded by CP12-2. GapA-1 is coordinately expressed by light with PRK and CP12-2. The enzyme activity, tested in leaf protein extracts dropped significantly after external sucrose treatment for the photosynthetic GAPDH (NADPH-dependent) but not for the cytosolic GAPDH (NADH-dependent). |
eugene3.00410184 | AT4G09970 | Q6DBH2 | 35.2 | not assigned.unknown | -1.556163887 | 0.001266738 | unknown protein | |
estExt_Genewise1_v1.C_290436 | AT4G17600 | Q9SYX1 | 27.3.23 | RNA.regulation of transcription.HSF,Heat-shock transcription factor family | -1.554740702 | 0.000819418 | LIL3:1; transcription factor | Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1. |
estExt_Genewise1_v1.C_660408 | AT1G08380 | Q949Q5 | 1.1.2.2 | PS.lightreaction.photosystem I.PSI polypeptide subunits | -1.554350185 | 0.000824599 | PSAO (photosystem I subunit O) | Encodes subunit O of photosystem I. |
fgenesh4_pm.C_LG_IV000256 | AT1G23890 | Q945M3 | 35.1 | not assigned.no ontology | -1.553773661 | 0.000547492 | NHL repeat-containing protein | |
gw1.XIV.724.1 | AT3G60740 | Q8L5R3 | 31.1 | cell.organisation | -1.530313101 | 0.000502311 | TTN1 (TITAN 1) | Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped (pilz) and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization. |
estExt_fgenesh4_pg.C_LG_VI0690 | AT5G02160 | Q9LZL6 | 35.2 | not assigned.unknown | -1.528057219 | 0.00186772 |