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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0202001702
AT1G79040
P27202
1.1.1.2
PS.lightreaction.photosystem II.PSII polypeptide subunits
-1.572120639
0.00321575
PSBR (photosystem II subunit R)
Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.
eugene3.00091004
AT2G42280
Q66GR3
27.3.6
RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
-1.571338212
0.000341683
basic helix-loop-helix (bHLH) family protein
estExt_fgenesh4_pg.C_LG_XIV0805
AT3G26650
P25856
1.3.4
PS.calvin cycle.GAP
-1.562120185
0.0030979
GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase
Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecular complex with phosphoribulokinase (PRK) thought to be linked by a small peptide encoded by CP12-2. GapA-1 is coordinately expressed by light with PRK and CP12-2. The enzyme activity, tested in leaf protein extracts dropped significantly after external sucrose treatment for the photosynthetic GAPDH (NADPH-dependent) but not for the cytosolic GAPDH (NADH-dependent).
eugene3.00410184
AT4G09970
Q6DBH2
35.2
not assigned.unknown
-1.556163887
0.001266738
unknown protein
estExt_Genewise1_v1.C_290436
AT4G17600
Q9SYX1
27.3.23
RNA.regulation of transcription.HSF,Heat-shock transcription factor family
-1.554740702
0.000819418
LIL3:1; transcription factor
Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1.
estExt_Genewise1_v1.C_660408
AT1G08380
Q949Q5
1.1.2.2
PS.lightreaction.photosystem I.PSI polypeptide subunits
-1.554350185
0.000824599
PSAO (photosystem I subunit O)
Encodes subunit O of photosystem I.
fgenesh4_pm.C_LG_IV000256
AT1G23890
Q945M3
35.1
not assigned.no ontology
-1.553773661
0.000547492
NHL repeat-containing protein
gw1.XIV.724.1
AT3G60740
Q8L5R3
31.1
cell.organisation
-1.530313101
0.000502311
TTN1 (TITAN 1)
Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped (pilz) and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.
estExt_fgenesh4_pg.C_LG_VI0690
AT5G02160
Q9LZL6
35.2
not assigned.unknown
-1.528057219
0.00186772
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