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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0001018301
AT5G22580
Q9FK81
35.2
not assigned.unknown
-1.638274405
0.000900073
estExt_Genewise1_v1.C_LG_I4174
AT4G14960
P29511
31.1
cell.organisation
-1.635411243
0.001812014
TUA6 (tubulin alpha-6 chiain)
Encodes an alpha-tubulin isoform required for right handed helical growth.
gw1.IX.2621.1
AT1G04820
Q0WV25
31.1
cell.organisation
-1.629915582
0.000995331
TUA4 (tubulin alpha-4 chain)
Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.
eugene3.01200081
AT3G09390
P25860
15.2
metal handling.binding, chelation and storage
-1.626284813
0.000912122
MT2A (METALLOTHIONEIN 2A)
metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage
estExt_Genewise1_v1.C_LG_XIII0142
AT1G06980
35.2
not assigned.unknown
-1.621127332
0.00031221
eugene3.01180035
AT1G32470
Q9LQL0
1.2.4.4
PS.photorespiration.glycine cleavage.H protein
-1.612081134
0.000892351
glycine cleavage system H protein, mitochondrial, putative
eugene3.00140672
AT3G62550
Q93W91
17.5.3
hormone metabolism.ethylene.induced-regulated-responsive-activated
-1.610384305
0.000930572
universal stress protein (USP) family protein
estExt_Genewise1_v1.C_LG_I6144
AT4G26530
O65581
1.3.6
PS.calvin cycle.aldolase
-1.600529414
0.000901749
fructose-bisphosphate aldolase, putative
estExt_Genewise1_v1.C_LG_VII0038
AT5G65730
Q8LF99
10.7
cell wall.modification
-1.599117739
0.001411255
xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative
gw1.I.2355.1
AT2G04700
Q9SJ89
21.1
redox.thioredoxin
-1.585627039
0.001914146
ferredoxin thioredoxin reductase catalytic beta chain family protein
eugene3.00111184
AT1G79040
P27202
1.1.1.2
PS.lightreaction.photosystem II.PSII polypeptide subunits
-1.580423598
0.001887751
PSBR (photosystem II subunit R)
Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.
gw1.XI.2025.1
AT1G50410
Q94BR5
27.3.44
RNA.regulation of transcription.Chromatin Remodeling Factors
-1.574212637
0.000504927
SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein
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