top of page

Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pm.C_LG_II0251
AT3G63140
Q9LYA9
27.3.99
RNA.regulation of transcription.unclassified
-1.698807903
0.001662118
mRNA-binding protein, putative
grail3.0025002201
AT2G36830
P25818
34.19.2
transport.Major Intrinsic Proteins.TIP
-1.681364806
0.000824246
GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel
encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers.
grail3.0111002302
AT4G21960
Q9SB81
26.12
misc.peroxidases
-1.679326846
0.001013619
PRXR1 (peroxidase 42); peroxidase
Encodes AT4g21960 (AT4g21960/T8O5_170).
estExt_fgenesh4_pm.C_LG_I0604
AT1G20030
Q9LNT0
20.1
stress.biotic
-1.67217343
0.000453026
pathogenesis-related thaumatin family protein
estExt_Genewise1_v1.C_LG_X5229
AT1G60780
O22715
29.3.4.99
protein.targeting.secretory pathway.unspecified
-1.669459655
0.000327364
clathrin adaptor complexes medium subunit family protein
estExt_fgenesh4_pm.C_LG_XVI0067
AT3G56910
Q9LER7
29.2.1.1.1.2.85
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.PSRP5
-1.668372812
0.000947029
PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)
eugene3.00080951
AT1G17285
Q84MD1
35.2
not assigned.unknown
-1.661863232
0.001305138
estExt_fgenesh4_pg.C_LG_IV0894
AT5G15900
Q9LFT0
35.2
not assigned.unknown
-1.661414362
0.000805617
gw1.IX.3861.1
AT2G29630
O82392
18.2
Co-factor and vitamine metabolism.thiamine
-1.650155848
0.004102098
thiamine biosynthesis family protein / thiC family protein
estExt_Genewise1_v1.C_LG_XII1403
AT5G23750
Q9FFA5
27.3.99
RNA.regulation of transcription.unclassified
-1.643783928
0.000543387
remorin family protein
estExt_Genewise1_v1.C_LG_IV3319
AT3G18280
Q9LJQ3
26.21
misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
-1.640590432
0.000851641
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
grail3.0061001101
AT2G46820
Q8LCA1
1.1.2.2
PS.lightreaction.photosystem I.PSI polypeptide subunits
-1.639453173
0.0030651
TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA)
Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits.
bottom of page