Species & Dataset
Experiment
Foliar Ozone Injury
-
Populus trichocarpa
-
Common name: Poplar cottonwood
-
Family: Salicaceae
-
Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
-
Tissue: Shoot leaves
-
Ozone concentration: 16.7 nL L-1 (Control)
-
93.1 nL L-1 (Treatment)
-
Ozone exposure: Whole experimental period
-
Sampling time: End of exposure period
-
Platform: Microarray
-
Year of study: 2010
-
Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_pm.C_LG_II0251 | AT3G63140 | Q9LYA9 | 27.3.99 | RNA.regulation of transcription.unclassified | -1.698807903 | 0.001662118 | mRNA-binding protein, putative | |
grail3.0025002201 | AT2G36830 | P25818 | 34.19.2 | transport.Major Intrinsic Proteins.TIP | -1.681364806 | 0.000824246 | GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel | encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. |
grail3.0111002302 | AT4G21960 | Q9SB81 | 26.12 | misc.peroxidases | -1.679326846 | 0.001013619 | PRXR1 (peroxidase 42); peroxidase | Encodes AT4g21960 (AT4g21960/T8O5_170). |
estExt_fgenesh4_pm.C_LG_I0604 | AT1G20030 | Q9LNT0 | 20.1 | stress.biotic | -1.67217343 | 0.000453026 | pathogenesis-related thaumatin family protein | |
estExt_Genewise1_v1.C_LG_X5229 | AT1G60780 | O22715 | 29.3.4.99 | protein.targeting.secretory pathway.unspecified | -1.669459655 | 0.000327364 | clathrin adaptor complexes medium subunit family protein | |
estExt_fgenesh4_pm.C_LG_XVI0067 | AT3G56910 | Q9LER7 | 29.2.1.1.1.2.85 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.PSRP5 | -1.668372812 | 0.000947029 | PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) | |
eugene3.00080951 | AT1G17285 | Q84MD1 | 35.2 | not assigned.unknown | -1.661863232 | 0.001305138 | ||
estExt_fgenesh4_pg.C_LG_IV0894 | AT5G15900 | Q9LFT0 | 35.2 | not assigned.unknown | -1.661414362 | 0.000805617 | ||
gw1.IX.3861.1 | AT2G29630 | O82392 | 18.2 | Co-factor and vitamine metabolism.thiamine | -1.650155848 | 0.004102098 | thiamine biosynthesis family protein / thiC family protein | |
estExt_Genewise1_v1.C_LG_XII1403 | AT5G23750 | Q9FFA5 | 27.3.99 | RNA.regulation of transcription.unclassified | -1.643783928 | 0.000543387 | remorin family protein | |
estExt_Genewise1_v1.C_LG_IV3319 | AT3G18280 | Q9LJQ3 | 26.21 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | -1.640590432 | 0.000851641 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | |
grail3.0061001101 | AT2G46820 | Q8LCA1 | 1.1.2.2 | PS.lightreaction.photosystem I.PSI polypeptide subunits | -1.639453173 | 0.0030651 | TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) | Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits. |