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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00010275
AT2G47110
P59232
29.5.11
protein.degradation.ubiquitin
-1.93837719
0.00023652
UBQ6 (ubiquitin 6); protein binding
polyubiquitin gene
estExt_fgenesh4_pg.C_LG_VII1013
AT5G66680
Q944K2
29.7
protein.glycosylation
-1.912049674
0.002887409
DGL1 (defective glycosylation 1); dolichyl-diphosphooligosaccharide-protein glycotransferase
Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.
fgenesh4_pm.C_LG_VII000149
AT5G51810
Q39111
17.6.1.11
hormone metabolism.gibberelin.synthesis-degradation.GA20 oxidase
-1.90098456
0.000242174
ATGA20OX2/GA20OX2 (Gibberellin 20 oxidase 2); gibberellin 20-oxidase
Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.
estExt_Genewise1_v1.C_LG_IX2261
AT3G19320
Q9LT85
30.2.99
signalling.receptor kinases.misc
-1.88596799
0.001575473
leucine-rich repeat family protein
gw1.129.1.1
AT1G74730
Q94F10
35.2
not assigned.unknown
-1.85035958
0.000237052
eugene3.00280025
AT5G07990
Q9SD85
16.8.3.3
secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3''-monooxygenase
-1.839431678
0.001723747
TT7 (TRANSPARENT TESTA 7); flavonoid 3-monooxygenase/ oxygen binding
Required for flavonoid 3 hydroxylase activity.
grail3.0033008001
AT4G24220
Q9STX2
33.99
development.unspecified
-1.831070427
0.002649729
VEP1 (VEIN PATTERNING 1)
encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.
estExt_Genewise1_v1.C_660086
AT5G22580
Q9FK81
35.2
not assigned.unknown
-1.756351409
0.001151611
estExt_Genewise1_v1.C_LG_XII1843
AT1G73620
Q9C9U9
20.1
stress.biotic
-1.738265306
0.001262977
thaumatin-like protein, putative / pathogenesis-related protein, putative
eugene3.00030242
AT5G07990
Q9SD85
16.8.3.3
secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3''-monooxygenase
-1.737958609
0.000340777
TT7 (TRANSPARENT TESTA 7); flavonoid 3-monooxygenase/ oxygen binding
Required for flavonoid 3 hydroxylase activity.
grail3.0013041501
AT2G45180
Q42044
26.21
misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
-1.734874249
0.00383458
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
estExt_Genewise1_v1.C_290420
AT5G46800
Q93XM7
34.9
transport.metabolite transporters at the mitochondrial membrane
-1.700153003
0.003338435
BOU (A BOUT DE SOUFFLE); binding
Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein
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