Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00010275 | AT2G47110 | P59232 | 29.5.11 | protein.degradation.ubiquitin | -1.93837719 | 0.00023652 | UBQ6 (ubiquitin 6); protein binding | polyubiquitin gene |
estExt_fgenesh4_pg.C_LG_VII1013 | AT5G66680 | Q944K2 | 29.7 | protein.glycosylation | -1.912049674 | 0.002887409 | DGL1 (defective glycosylation 1); dolichyl-diphosphooligosaccharide-protein glycotransferase | Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins. |
fgenesh4_pm.C_LG_VII000149 | AT5G51810 | Q39111 | 17.6.1.11 | hormone metabolism.gibberelin.synthesis-degradation.GA20 oxidase | -1.90098456 | 0.000242174 | ATGA20OX2/GA20OX2 (Gibberellin 20 oxidase 2); gibberellin 20-oxidase | Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock. |
estExt_Genewise1_v1.C_LG_IX2261 | AT3G19320 | Q9LT85 | 30.2.99 | signalling.receptor kinases.misc | -1.88596799 | 0.001575473 | leucine-rich repeat family protein | |
gw1.129.1.1 | AT1G74730 | Q94F10 | 35.2 | not assigned.unknown | -1.85035958 | 0.000237052 | ||
eugene3.00280025 | AT5G07990 | Q9SD85 | 16.8.3.3 | secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3''-monooxygenase | -1.839431678 | 0.001723747 | TT7 (TRANSPARENT TESTA 7); flavonoid 3-monooxygenase/ oxygen binding | Required for flavonoid 3 hydroxylase activity. |
grail3.0033008001 | AT4G24220 | Q9STX2 | 33.99 | development.unspecified | -1.831070427 | 0.002649729 | VEP1 (VEIN PATTERNING 1) | encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding. |
estExt_Genewise1_v1.C_660086 | AT5G22580 | Q9FK81 | 35.2 | not assigned.unknown | -1.756351409 | 0.001151611 | ||
estExt_Genewise1_v1.C_LG_XII1843 | AT1G73620 | Q9C9U9 | 20.1 | stress.biotic | -1.738265306 | 0.001262977 | thaumatin-like protein, putative / pathogenesis-related protein, putative | |
eugene3.00030242 | AT5G07990 | Q9SD85 | 16.8.3.3 | secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3''-monooxygenase | -1.737958609 | 0.000340777 | TT7 (TRANSPARENT TESTA 7); flavonoid 3-monooxygenase/ oxygen binding | Required for flavonoid 3 hydroxylase activity. |
grail3.0013041501 | AT2G45180 | Q42044 | 26.21 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | -1.734874249 | 0.00383458 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | |
estExt_Genewise1_v1.C_290420 | AT5G46800 | Q93XM7 | 34.9 | transport.metabolite transporters at the mitochondrial membrane | -1.700153003 | 0.003338435 | BOU (A BOUT DE SOUFFLE); binding | Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein |