Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_kg.C_LG_XI0033 | AT5G54270 | Q9S7M0 | 1.1.1.1 | PS.lightreaction.photosystem II.LHC-II | -1.380260111 | 0.00262866 | LHCB3 (LIGHT-HARVESTING CHLOROPHYLL BINDING PROTEIN 3) | Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II). |
estExt_fgenesh4_pg.C_2080003 | AT3G09390 | P25860 | 15.2 | metal handling.binding, chelation and storage | -1.37710417 | 0.001795293 | MT2A (METALLOTHIONEIN 2A) | metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage |
estExt_Genewise1_v1.C_LG_VI2154 | AT2G23810 | Q8S8Q6 | 33.99 | development.unspecified | -1.368813935 | 0.002446094 | TET8 (TETRASPANIN8) | Member of TETRASPANIN family |
eugene3.00080078 | AT1G16880 | Q9FZ47 | 35.1 | not assigned.no ontology | -1.368581316 | 0.00414833 | uridylyltransferase-related | |
grail3.0019029201 | AT2G18050 | Q3EBY3 | 28.1.3.1 | DNA.synthesis/chromatin structure.histone.H1 | -1.368306489 | 0.002218319 | HIS1-3 (HISTONE H1-3); DNA binding | encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. |
eugene3.00090344 | AT4G35000 | Q42564 | 21.2.1 | redox.ascorbate and glutathione.ascorbate | -1.368011378 | 0.001144613 | APX3 (ASCORBATE PEROXIDASE 3); L-ascorbate peroxidase | Encodes a microsomal ascorbate peroxidase APX3. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The APX3 protein interacts with AKR2 (ankyrin-containing protein that interacts with AFT1) and AFT1, a 14-3-3 protein. |
grail3.0001112401 | AT5G02020 | Q9LZM9 | 35.2 | not assigned.unknown | -1.36695298 | 0.002708903 | ||
grail3.0037002601 | AT5G06900 | Q9FL56 | 26.10 | misc.cytochrome P450 | -2.302175335 | 0.002133941 | CYP93D1 (cytochrome P450, family 93, subfamily D, polypeptide 1); oxygen binding | member of CYP93D |
estExt_fgenesh4_pg.C_LG_IV0455 | AT5G28010 | F4K5S5 | 20.2.99 | stress.abiotic.unspecified | -2.071254601 | 0.001205709 | Bet v I allergen family protein | |
gw1.II.532.1 | AT4G01897 | Q8LC12 | 35.2 | not assigned.unknown | -2.039715425 | 0.000239678 | ||
eugene3.00280069 | AT3G26060 | Q9LU86 | 21.5 | redox.peroxiredoxin | -2.039479199 | 0.002399733 | peroxiredoxin Q, putative | encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus |
eugene3.00130565 | AT4G26320 | Q9STQ3 | 10.5.1.1 | cell wall.cell wall proteins.AGPs.AGP | -2.001065073 | 0.002724034 | AGP13 (ARABINOGALACTAN PROTEIN 13) |