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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_kg.C_LG_XI0033
AT5G54270
Q9S7M0
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
-1.380260111
0.00262866
LHCB3 (LIGHT-HARVESTING CHLOROPHYLL BINDING PROTEIN 3)
Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).
estExt_fgenesh4_pg.C_2080003
AT3G09390
P25860
15.2
metal handling.binding, chelation and storage
-1.37710417
0.001795293
MT2A (METALLOTHIONEIN 2A)
metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage
estExt_Genewise1_v1.C_LG_VI2154
AT2G23810
Q8S8Q6
33.99
development.unspecified
-1.368813935
0.002446094
TET8 (TETRASPANIN8)
Member of TETRASPANIN family
eugene3.00080078
AT1G16880
Q9FZ47
35.1
not assigned.no ontology
-1.368581316
0.00414833
uridylyltransferase-related
grail3.0019029201
AT2G18050
Q3EBY3
28.1.3.1
DNA.synthesis/chromatin structure.histone.H1
-1.368306489
0.002218319
HIS1-3 (HISTONE H1-3); DNA binding
encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.
eugene3.00090344
AT4G35000
Q42564
21.2.1
redox.ascorbate and glutathione.ascorbate
-1.368011378
0.001144613
APX3 (ASCORBATE PEROXIDASE 3); L-ascorbate peroxidase
Encodes a microsomal ascorbate peroxidase APX3. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The APX3 protein interacts with AKR2 (ankyrin-containing protein that interacts with AFT1) and AFT1, a 14-3-3 protein.
grail3.0001112401
AT5G02020
Q9LZM9
35.2
not assigned.unknown
-1.36695298
0.002708903
grail3.0037002601
AT5G06900
Q9FL56
26.10
misc.cytochrome P450
-2.302175335
0.002133941
CYP93D1 (cytochrome P450, family 93, subfamily D, polypeptide 1); oxygen binding
member of CYP93D
estExt_fgenesh4_pg.C_LG_IV0455
AT5G28010
F4K5S5
20.2.99
stress.abiotic.unspecified
-2.071254601
0.001205709
Bet v I allergen family protein
gw1.II.532.1
AT4G01897
Q8LC12
35.2
not assigned.unknown
-2.039715425
0.000239678
eugene3.00280069
AT3G26060
Q9LU86
21.5
redox.peroxiredoxin
-2.039479199
0.002399733
peroxiredoxin Q, putative
encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus
eugene3.00130565
AT4G26320
Q9STQ3
10.5.1.1
cell wall.cell wall proteins.AGPs.AGP
-2.001065073
0.002724034
AGP13 (ARABINOGALACTAN PROTEIN 13)
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