Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_Genewise1_v1.C_LG_I9864 | AT1G15820 | Q9XF90 | 1.1.1.1 | PS.lightreaction.photosystem II.LHC-II | -1.401219541 | 0.002074152 | LHCB6 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding | Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II. |
gw1.VII.1749.1 | AT4G39970 | Q680K2 | 35.1 | not assigned.no ontology | -1.400865352 | 0.003476825 | haloacid dehalogenase-like hydrolase family protein | |
eugene3.00130661 | AT5G17710 | Q94K56 | 29.6 | protein.folding | -1.400750145 | 0.003715672 | EMB1241 (EMBRYO DEFECTIVE 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization | |
grail3.0009037801 | AT1G60470 | O22693 | 3.1.1.2 | minor CHO metabolism.raffinose family.galactinol synthases.putative | -1.400663357 | 0.00091249 | ATGOLS4 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 4); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups | |
grail3.3561000101 | AT3G09390 | P25860 | 15.2 | metal handling.binding, chelation and storage | -1.39950424 | 0.002318618 | MT2A (METALLOTHIONEIN 2A) | metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage |
grail3.0025015101 | AT5G01530 | Q07473 | 1.1.1.1 | PS.lightreaction.photosystem II.LHC-II | -1.399356617 | 0.00371849 | chlorophyll A-B binding protein CP29 (LHCB4) | |
gw1.I.26.1 | AT5G64570 | Q9FLG1 | 10.6.2 | cell wall.degradation.mannan-xylose-arabinose-fucose | -1.399340859 | 0.001071421 | XYL4 (beta-xylosidase 4); hydrolase, hydrolyzing O-glycosyl compounds | Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases. |
eugene3.00120808 | AT5G03340 | Q9LZF6 | 31.2 | cell.division | -1.395055559 | 0.003673235 | (Cell division control protein 48 homolog E); ATPase | |
eugene3.00140902 | AT2G42750 | Q9SJI1 | 20.2.1 | stress.abiotic.heat | -1.393296601 | 0.000775648 | DNAJ heat shock N-terminal domain-containing protein | |
gw1.XVIII.1814.1 | AT1G80730 | Q42485 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | -1.392020887 | 0.002050983 | ZFP1 (ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1); nucleic acid binding / transcription factor/ zinc ion binding | Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation. |
gw1.40.788.1 | AT1G45207 | A0A1P8AMX7 | 27.3.99 | RNA.regulation of transcription.unclassified | -1.38998987 | 0.000817329 | remorin family protein | |
eugene3.00011927 | AT5G14910 | Q93VK7 | 35.1 | not assigned.no ontology | -1.385323813 | 0.002590297 | heavy-metal-associated domain-containing protein |