top of page

Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_LG_I9864
AT1G15820
Q9XF90
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
-1.401219541
0.002074152
LHCB6 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding
Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II.
gw1.VII.1749.1
AT4G39970
Q680K2
35.1
not assigned.no ontology
-1.400865352
0.003476825
haloacid dehalogenase-like hydrolase family protein
eugene3.00130661
AT5G17710
Q94K56
29.6
protein.folding
-1.400750145
0.003715672
EMB1241 (EMBRYO DEFECTIVE 1241); adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization
grail3.0009037801
AT1G60470
O22693
3.1.1.2
minor CHO metabolism.raffinose family.galactinol synthases.putative
-1.400663357
0.00091249
ATGOLS4 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 4); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups
grail3.3561000101
AT3G09390
P25860
15.2
metal handling.binding, chelation and storage
-1.39950424
0.002318618
MT2A (METALLOTHIONEIN 2A)
metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage
grail3.0025015101
AT5G01530
Q07473
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
-1.399356617
0.00371849
chlorophyll A-B binding protein CP29 (LHCB4)
gw1.I.26.1
AT5G64570
Q9FLG1
10.6.2
cell wall.degradation.mannan-xylose-arabinose-fucose
-1.399340859
0.001071421
XYL4 (beta-xylosidase 4); hydrolase, hydrolyzing O-glycosyl compounds
Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
eugene3.00120808
AT5G03340
Q9LZF6
31.2
cell.division
-1.395055559
0.003673235
(Cell division control protein 48 homolog E); ATPase
eugene3.00140902
AT2G42750
Q9SJI1
20.2.1
stress.abiotic.heat
-1.393296601
0.000775648
DNAJ heat shock N-terminal domain-containing protein
gw1.XVIII.1814.1
AT1G80730
Q42485
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
-1.392020887
0.002050983
ZFP1 (ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1); nucleic acid binding / transcription factor/ zinc ion binding
Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation.
gw1.40.788.1
AT1G45207
A0A1P8AMX7
27.3.99
RNA.regulation of transcription.unclassified
-1.38998987
0.000817329
remorin family protein
eugene3.00011927
AT5G14910
Q93VK7
35.1
not assigned.no ontology
-1.385323813
0.002590297
heavy-metal-associated domain-containing protein
bottom of page