Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_pm.C_LG_IV0435 | AT3G18890 | Q8H0U5 | 30.11 | signalling.light | -1.446843894 | 0.00087794 | catalytic/ coenzyme binding | |
estExt_fgenesh4_pg.C_LG_XI0474 | AT3G43720 | Q9LZH5 | 26.21 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | -1.43916269 | 0.001953814 | lipid binding | |
fgenesh4_pg.C_LG_VIII001084 | AT3G25920 | P25873 | 29.2.1.1.1.2.15 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L15 | -1.429884468 | 0.002930625 | RPL15 (ribosomal protein L15) | encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex |
gw1.130.194.1 | AT3G19290 | Q9M7Q2 | 17.1.2 | hormone metabolism.abscisic acid.signal transduction | -1.428896724 | 0.0013891 | ABF4 (ABRE BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional activator | bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses. |
fgenesh4_pg.C_LG_IX000393 | AT4G34760 | O65695 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | -1.428737635 | 0.003423805 | auxin-responsive family protein | |
estExt_fgenesh4_pg.C_LG_X0618 | AT1G60470 | O22693 | 3.1.1.2 | minor CHO metabolism.raffinose family.galactinol synthases.putative | -1.428128944 | 0.002666754 | ATGOLS4 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 4); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups | |
gw1.III.847.1 | AT1G62760 | Q9SI74 | 26.18 | misc.invertase/pectin methylesterase inhibitor family protein | -1.426834025 | 0.001883439 | invertase/pectin methylesterase inhibitor family protein | |
estExt_fgenesh4_pg.C_570068 | AT4G35980 | Q8L969 | 35.2 | not assigned.unknown | -1.423000619 | 0.000522249 | ||
eugene3.00031570 | AT1G09200 | 28.1.3.2.3 | DNA.synthesis/chromatin structure.histone.core.H3 | -1.413821871 | 0.002020122 | histone H3 | ||
estExt_Genewise1_v1.C_LG_V0351 | AT4G40020 | Q9SMQ3 | 35.2 | not assigned.unknown | -1.406109911 | 0.001498597 | ||
estExt_fgenesh4_pm.C_LG_X0585 | AT3G17210 | Q9LUV2 | 20.1.7 | stress.biotic.PR-proteins | -1.405487013 | 0.001267491 | stable protein 1-related | |
eugene3.00020134 | AT3G03190 | Q96324 | 26.9 | misc.glutathione S transferases | -1.401344001 | 0.001399908 | ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase | Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). |