top of page

Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pm.C_LG_IV0435
AT3G18890
Q8H0U5
30.11
signalling.light
-1.446843894
0.00087794
catalytic/ coenzyme binding
estExt_fgenesh4_pg.C_LG_XI0474
AT3G43720
Q9LZH5
26.21
misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
-1.43916269
0.001953814
lipid binding
fgenesh4_pg.C_LG_VIII001084
AT3G25920
P25873
29.2.1.1.1.2.15
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L15
-1.429884468
0.002930625
RPL15 (ribosomal protein L15)
encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex
gw1.130.194.1
AT3G19290
Q9M7Q2
17.1.2
hormone metabolism.abscisic acid.signal transduction
-1.428896724
0.0013891
ABF4 (ABRE BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional activator
bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses.
fgenesh4_pg.C_LG_IX000393
AT4G34760
O65695
17.2.3
hormone metabolism.auxin.induced-regulated-responsive-activated
-1.428737635
0.003423805
auxin-responsive family protein
estExt_fgenesh4_pg.C_LG_X0618
AT1G60470
O22693
3.1.1.2
minor CHO metabolism.raffinose family.galactinol synthases.putative
-1.428128944
0.002666754
ATGOLS4 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 4); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups
gw1.III.847.1
AT1G62760
Q9SI74
26.18
misc.invertase/pectin methylesterase inhibitor family protein
-1.426834025
0.001883439
invertase/pectin methylesterase inhibitor family protein
estExt_fgenesh4_pg.C_570068
AT4G35980
Q8L969
35.2
not assigned.unknown
-1.423000619
0.000522249
eugene3.00031570
AT1G09200
28.1.3.2.3
DNA.synthesis/chromatin structure.histone.core.H3
-1.413821871
0.002020122
histone H3
estExt_Genewise1_v1.C_LG_V0351
AT4G40020
Q9SMQ3
35.2
not assigned.unknown
-1.406109911
0.001498597
estExt_fgenesh4_pm.C_LG_X0585
AT3G17210
Q9LUV2
20.1.7
stress.biotic.PR-proteins
-1.405487013
0.001267491
stable protein 1-related
eugene3.00020134
AT3G03190
Q96324
26.9
misc.glutathione S transferases
-1.401344001
0.001399908
ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase
Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).
bottom of page