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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00050802
AT5G14320
P42732
29.2.1.1.1.1.13
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S13
-1.486803693
0.001610962
30S ribosomal protein S13, chloroplast (CS13)
eugene3.00150423
AT3G17930
Q94BY7
35.2
not assigned.unknown
-1.480630118
0.001047191
gw1.V.3269.1
AT3G19950
Q8LPN7
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
-1.475309521
0.002881004
zinc finger (C3HC4-type RING finger) family protein
eugene3.00130049
AT4G25810
Q38910
10.7
cell wall.modification
-1.471016124
0.001957158
XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds
xyloglucan endotransglycosylase-related protein (XTR6)
estExt_fgenesh4_pm.C_LG_III0416
AT1G63770
Q8H0S9
29.5
protein.degradation
-1.466707192
0.002497231
peptidase M1 family protein
estExt_fgenesh4_pg.C_LG_XVI1044
AT2G38140
O80439
29.2.1.1.1.1.31
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S31
-1.463921391
0.001117583
PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4); structural constituent of ribosome
plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete
estExt_fgenesh4_pg.C_1580005
AT5G07990
Q9SD85
16.8.3.3
secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3''-monooxygenase
-1.463777806
0.003980266
TT7 (TRANSPARENT TESTA 7); flavonoid 3-monooxygenase/ oxygen binding
Required for flavonoid 3 hydroxylase activity.
grail3.0210000501
AT4G15830
F4JKW9
35.2
not assigned.unknown
-1.457657131
0.003454577
binding
estExt_Genewise1_v1.C_LG_XVIII3093
AT2G24090
Q8VZ55
29.2.1.1.3.2.35
protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L35
-1.452460135
0.001842195
ribosomal protein L35 family protein
estExt_Genewise1_v1.C_LG_I8587
AT4G23890
Q9T0A4
35.2
not assigned.unknown
-1.452380817
0.00063475
estExt_fgenesh4_pg.C_1180067
AT5G47040
O64948
29.5.5
protein.degradation.serine protease
-1.449677815
0.003564233
Lon protease homolog 1, mitochondrial (LON)
grail3.0001059501
AT4G34050
O49499
16.2.1.6
secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT
-1.447374106
0.001200503
caffeoyl-CoA 3-O-methyltransferase, putative
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