Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00050802 | AT5G14320 | P42732 | 29.2.1.1.1.1.13 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S13 | -1.486803693 | 0.001610962 | 30S ribosomal protein S13, chloroplast (CS13) | |
eugene3.00150423 | AT3G17930 | Q94BY7 | 35.2 | not assigned.unknown | -1.480630118 | 0.001047191 | ||
gw1.V.3269.1 | AT3G19950 | Q8LPN7 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | -1.475309521 | 0.002881004 | zinc finger (C3HC4-type RING finger) family protein | |
eugene3.00130049 | AT4G25810 | Q38910 | 10.7 | cell wall.modification | -1.471016124 | 0.001957158 | XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds | xyloglucan endotransglycosylase-related protein (XTR6) |
estExt_fgenesh4_pm.C_LG_III0416 | AT1G63770 | Q8H0S9 | 29.5 | protein.degradation | -1.466707192 | 0.002497231 | peptidase M1 family protein | |
estExt_fgenesh4_pg.C_LG_XVI1044 | AT2G38140 | O80439 | 29.2.1.1.1.1.31 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S31 | -1.463921391 | 0.001117583 | PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4); structural constituent of ribosome | plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete |
estExt_fgenesh4_pg.C_1580005 | AT5G07990 | Q9SD85 | 16.8.3.3 | secondary metabolism.flavonoids.dihydroflavonols.flavonoid 3''-monooxygenase | -1.463777806 | 0.003980266 | TT7 (TRANSPARENT TESTA 7); flavonoid 3-monooxygenase/ oxygen binding | Required for flavonoid 3 hydroxylase activity. |
grail3.0210000501 | AT4G15830 | F4JKW9 | 35.2 | not assigned.unknown | -1.457657131 | 0.003454577 | binding | |
estExt_Genewise1_v1.C_LG_XVIII3093 | AT2G24090 | Q8VZ55 | 29.2.1.1.3.2.35 | protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L35 | -1.452460135 | 0.001842195 | ribosomal protein L35 family protein | |
estExt_Genewise1_v1.C_LG_I8587 | AT4G23890 | Q9T0A4 | 35.2 | not assigned.unknown | -1.452380817 | 0.00063475 | ||
estExt_fgenesh4_pg.C_1180067 | AT5G47040 | O64948 | 29.5.5 | protein.degradation.serine protease | -1.449677815 | 0.003564233 | Lon protease homolog 1, mitochondrial (LON) | |
grail3.0001059501 | AT4G34050 | O49499 | 16.2.1.6 | secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT | -1.447374106 | 0.001200503 | caffeoyl-CoA 3-O-methyltransferase, putative |