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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00101945
AT2G44920
O22160
35.1
not assigned.no ontology
-1.255149772
0.001064253
thylakoid lumenal 15 kDa protein, chloroplast
grail3.0018043001
AT5G42070
Q8RWR9
35.2
not assigned.unknown
-1.254208774
0.002221584
eugene3.00031813
AT5G07100
Q9C5T3
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
-1.249118563
0.001741958
WRKY26 (WRKY DNA-binding protein 26); transcription factor
Encodes WRKY DNA-binding protein 26 (WRKY26).
gw1.X.1601.1
AT2G40320
F4IH21
35.2
not assigned.unknown
-1.243106411
0.003245735
estExt_Genewise1_v1.C_LG_VII1788
AT5G65220
Q9FJP3
29.2.1.1.1.2.29
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L29
-1.240880431
0.002698951
ribosomal protein L29 family protein
eugene3.00091335
AT3G09390
P25860
15.2
metal handling.binding, chelation and storage
-1.524713179
0.001782461
MT2A (METALLOTHIONEIN 2A)
metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage
estExt_Genewise1_v1.C_LG_I1289
AT2G28900
Q9ZV24
29.3.3
protein.targeting.chloroplast
-1.521697622
0.003404473
OEP16 (OUTER ENVELOPE PROTEIN 16); protein translocase
Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.
eugene3.00081422
AT4G02770
Q9S7H1
1.1.2.2
PS.lightreaction.photosystem I.PSI polypeptide subunits
-1.514727701
0.003952965
PSAD-1 (photosystem I subunit D-1)
Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1)
estExt_fgenesh4_pm.C_LG_II0962
AT2G05070
Q9S7J7
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
-1.514693268
0.00333839
LHCB2.2 (Photosystem II light harvesting complex gene 2.2); chlorophyll binding
Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.
eugene3.00012691
AT1G30475
B3H5U9
35.2
not assigned.unknown
-1.51466401
0.003493294
gw1.XI.3354.1
AT1G29070
Q9LP37
29.2.1.1.1.2.34
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L34
-1.489317718
0.001948548
ribosomal protein L34 family protein
eugene3.00120098
AT2G44930
O22159
35.2
not assigned.unknown
-1.486814145
0.000800745
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