Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00101945 | AT2G44920 | O22160 | 35.1 | not assigned.no ontology | -1.255149772 | 0.001064253 | thylakoid lumenal 15 kDa protein, chloroplast | |
grail3.0018043001 | AT5G42070 | Q8RWR9 | 35.2 | not assigned.unknown | -1.254208774 | 0.002221584 | ||
eugene3.00031813 | AT5G07100 | Q9C5T3 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | -1.249118563 | 0.001741958 | WRKY26 (WRKY DNA-binding protein 26); transcription factor | Encodes WRKY DNA-binding protein 26 (WRKY26). |
gw1.X.1601.1 | AT2G40320 | F4IH21 | 35.2 | not assigned.unknown | -1.243106411 | 0.003245735 | ||
estExt_Genewise1_v1.C_LG_VII1788 | AT5G65220 | Q9FJP3 | 29.2.1.1.1.2.29 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L29 | -1.240880431 | 0.002698951 | ribosomal protein L29 family protein | |
eugene3.00091335 | AT3G09390 | P25860 | 15.2 | metal handling.binding, chelation and storage | -1.524713179 | 0.001782461 | MT2A (METALLOTHIONEIN 2A) | metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage |
estExt_Genewise1_v1.C_LG_I1289 | AT2G28900 | Q9ZV24 | 29.3.3 | protein.targeting.chloroplast | -1.521697622 | 0.003404473 | OEP16 (OUTER ENVELOPE PROTEIN 16); protein translocase | Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. |
eugene3.00081422 | AT4G02770 | Q9S7H1 | 1.1.2.2 | PS.lightreaction.photosystem I.PSI polypeptide subunits | -1.514727701 | 0.003952965 | PSAD-1 (photosystem I subunit D-1) | Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1) |
estExt_fgenesh4_pm.C_LG_II0962 | AT2G05070 | Q9S7J7 | 1.1.1.1 | PS.lightreaction.photosystem II.LHC-II | -1.514693268 | 0.00333839 | LHCB2.2 (Photosystem II light harvesting complex gene 2.2); chlorophyll binding | Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. |
eugene3.00012691 | AT1G30475 | B3H5U9 | 35.2 | not assigned.unknown | -1.51466401 | 0.003493294 | ||
gw1.XI.3354.1 | AT1G29070 | Q9LP37 | 29.2.1.1.1.2.34 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L34 | -1.489317718 | 0.001948548 | ribosomal protein L34 family protein | |
eugene3.00120098 | AT2G44930 | O22159 | 35.2 | not assigned.unknown | -1.486814145 | 0.000800745 |