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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0016010201
AT5G26990
Q6NM26
20.2.3
stress.abiotic.drought/salt
-1.275114685
0.000384011
drought-responsive family protein
estExt_Genewise1_v1.C_1290095
AT5G61410
Q9SAU2
1.3.11
PS.calvin cycle.RPE
-1.273815257
0.003133407
RPE (EMBRYO DEFECTIVE 2728); ribulose-phosphate 3-epimerase
Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA
grail3.0023008101
AT5G57170
F4KAK0
35.1
not assigned.no ontology
-1.272450894
0.001961704
macrophage migration inhibitory factor family protein / MIF family protein
gw1.152.44.1
AT2G42250
O48532
26.10
misc.cytochrome P450
-1.270408791
0.001222174
CYP712A1 (cytochrome P450, family 712, subfamily A, polypeptide 1); oxygen binding
member of CYP712A
estExt_fgenesh4_pm.C_LG_XIV0141
AT4G01310
O04603
29.2.1.1.1.2.5
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L5
-1.268775607
0.001262332
ribosomal protein L5 family protein
eugene3.00041110
AT5G15490
Q9LF33
10.1.4
cell wall.precursor synthesis.UDP-Glc dehydrogenase (UGD)
-1.266974533
0.003004117
UDP-glucose 6-dehydrogenase, putative
eugene3.00020162
AT4G39330
P42734
16.2.1.10
secondary metabolism.phenylpropanoids.lignin biosynthesis.CAD
-1.266846231
0.002107742
mannitol dehydrogenase, putative
eugene3.00012665
AT4G26620
Q9SUA2
2.2.1.99
major CHO metabolism.degradation.sucrose.misc
-1.262362516
0.003475943
sucrase-related
fgenesh4_pg.C_scaffold_44000185
AT3G25560
Q8RY65
30.2.2
signalling.receptor kinases.leucine rich repeat II
-1.25782992
0.000152472
NIK2 (NSP-INTERACTING KINASE 2); protein kinase
grail3.0026021301
AT5G09920
O48890
27.2
RNA.transcription
-1.256675335
0.003883562
RPB15.9 (RNA polymerase II 15.9)
15.9 kDa subunit of RNA polymerase II
gw1.V.2242.1
AT1G76450
Q9S720
1.1.1.2
PS.lightreaction.photosystem II.PSII polypeptide subunits
-1.25660939
0.002568698
oxygen-evolving complex-related
estExt_fgenesh4_pg.C_LG_VIII1596
AT1G67740
O49347
1.1.1.2
PS.lightreaction.photosystem II.PSII polypeptide subunits
-1.255993102
0.00132055
PSBY (photosystem II BY)
PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood.
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