Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_Genewise1_v1.C_LG_X0543 | AT3G16920 | Q9LSP9 | 20.1 | stress.biotic | -1.30609347 | 0.000499502 | chitinase | |
gw1.131.249.1 | AT1G56560 | Q9FXA8 | 2.2.1.3.1 | major CHO metabolism.degradation.sucrose.invertases.neutral | -1.304770123 | 0.003408987 | beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative | |
gw1.IX.2512.1 | AT2G14830 | F4IHD7 | 35.2 | not assigned.unknown | -1.301560386 | 0.00296012 | ||
eugene3.00970009 | AT3G15900 | Q9LSC1 | 35.2 | not assigned.unknown | -1.293670777 | 0.004073509 | ||
estExt_Genewise1_v1.C_400481 | AT1G74970 | Q9XJ27 | 29.2.1.1.1.1.9 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S9 | -1.288708636 | 0.002977928 | RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome | ribosomal protein S9, nuclear encoded component of the chloroplast ribosome |
gw1.124.168.1 | AT2G33800 | P93014 | 29.2.1.1.1.1.5 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S5 | -1.287414517 | 0.001563875 | ribosomal protein S5 family protein | |
estExt_Genewise1_v1.C_LG_XIV3201 | AT5G48490 | Q9LV65 | 26.21 | misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | -1.287174008 | 0.002766108 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | |
eugene3.00141000 | AT1G05190 | O23049 | 29.2.1.1.1.2.6 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L6 | -1.285565927 | 0.003531393 | EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome | |
gw1.XI.904.1 | AT1G64720 | Q9XIR9 | 11.6 | lipid metabolism.lipid transfer proteins etc | -1.282748063 | 0.004024331 | CP5 | membrane related protein CP5 |
eugene3.00280238 | AT2G36830 | P25818 | 34.19.2 | transport.Major Intrinsic Proteins.TIP | -1.281089773 | 0.003070111 | GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel | encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. |
eugene3.00180800 | AT2G18960 | P20649 | 34.1.2 | transport.p- and v-ATPases.H+-exporting ATPase | -1.279135686 | 0.002245726 | AHA1 (PLASMA MEMBRANE PROTON ATPASE); ATPase | plasma membrane proton ATPase |
eugene3.00090471 | AT3G03170 | Q29PZ2 | 35.2 | not assigned.unknown | -1.276289305 | 0.002094405 |