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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_LG_X0543
AT3G16920
Q9LSP9
20.1
stress.biotic
-1.30609347
0.000499502
chitinase
gw1.131.249.1
AT1G56560
Q9FXA8
2.2.1.3.1
major CHO metabolism.degradation.sucrose.invertases.neutral
-1.304770123
0.003408987
beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative
gw1.IX.2512.1
AT2G14830
F4IHD7
35.2
not assigned.unknown
-1.301560386
0.00296012
eugene3.00970009
AT3G15900
Q9LSC1
35.2
not assigned.unknown
-1.293670777
0.004073509
estExt_Genewise1_v1.C_400481
AT1G74970
Q9XJ27
29.2.1.1.1.1.9
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S9
-1.288708636
0.002977928
RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome
ribosomal protein S9, nuclear encoded component of the chloroplast ribosome
gw1.124.168.1
AT2G33800
P93014
29.2.1.1.1.1.5
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S5
-1.287414517
0.001563875
ribosomal protein S5 family protein
estExt_Genewise1_v1.C_LG_XIV3201
AT5G48490
Q9LV65
26.21
misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
-1.287174008
0.002766108
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
eugene3.00141000
AT1G05190
O23049
29.2.1.1.1.2.6
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L6
-1.285565927
0.003531393
EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome
gw1.XI.904.1
AT1G64720
Q9XIR9
11.6
lipid metabolism.lipid transfer proteins etc
-1.282748063
0.004024331
CP5
membrane related protein CP5
eugene3.00280238
AT2G36830
P25818
34.19.2
transport.Major Intrinsic Proteins.TIP
-1.281089773
0.003070111
GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel
encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers.
eugene3.00180800
AT2G18960
P20649
34.1.2
transport.p- and v-ATPases.H+-exporting ATPase
-1.279135686
0.002245726
AHA1 (PLASMA MEMBRANE PROTON ATPASE); ATPase
plasma membrane proton ATPase
eugene3.00090471
AT3G03170
Q29PZ2
35.2
not assigned.unknown
-1.276289305
0.002094405
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