Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00030850 | AT1G12250 | Q8H1Q1 | 35.1.5 | not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein | -1.339258888 | 0.000774481 | thylakoid lumenal protein-related | |
estExt_fgenesh4_pm.C_970001 | AT3G15920 | Q9LSB9 | 30.9 | signalling.lipids | -1.33545405 | 0.001038907 | phox (PX) domain-containing protein | |
estExt_fgenesh4_pm.C_290079 | AT5G46630 | O23140 | 29.3.4.99 | protein.targeting.secretory pathway.unspecified | -1.334920196 | 0.004227773 | clathrin adaptor complexes medium subunit family protein | clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes |
estExt_Genewise1_v1.C_LG_I0230 | AT1G79850 | P16180 | 29.2.1.1.1.1.17 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S17 | -1.329795181 | 0.003082822 | RPS17 (ribosomal protein S17); structural constituent of ribosome | nuclear-encoded 30S chloroplast ribosomal protein S17 |
grail3.0003028702 | AT2G21600 | O48671 | 29.3.4.1 | protein.targeting.secretory pathway.ER | -1.323603264 | 0.00010448 | ATRER1B (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1B) | Key player of retrieval of ER membrane proteins |
fgenesh4_pm.C_LG_I000253 | AT5G49730 | Q8RWS6 | 15.1 | metal handling.acquisition | -1.315773399 | 0.002606204 | ATFRO6/FRO6 (FERRIC REDUCTION OXIDASE 6); ferric-chelate reductase/ oxidoreductase | Encodes a putative ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner. However, in vitro assays in yeast have not shown ferric chelate reductase activity for this protein. T |
gw1.163.69.1 | AT3G44890 | P25864 | 29.2.1.1.1.2.9 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L9 | -1.315454444 | 0.002231882 | RPL9 (ribosomal protein L9); structural constituent of ribosome | Plastid ribosomal protein CL9 |
gw1.II.1183.1 | AT1G01510 | O23702 | 27.3.34 | RNA.regulation of transcription.Orphan family | -1.3152449 | 0.001483783 | AN (ANGUSTIFOLIA) | Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction. |
estExt_Genewise1_v1.C_LG_XIV0850 | AT3G60900 | Q9LZX4 | 10.5.1.1 | cell wall.cell wall proteins.AGPs.AGP | -1.31521213 | 0.004197384 | FLA10 (fasciclin-like arabinogalactan-protein 10) | |
eugene3.00061718 | AT2G25810 | O82316 | 34.19.2 | transport.Major Intrinsic Proteins.TIP | -1.312477386 | 0.001647341 | TIP4;1 (tonoplast intrinsic protein 4;1); water channel | |
eugene3.00012414 | AT2G14890 | Q9C5S0 | 10.5.1.1 | cell wall.cell wall proteins.AGPs.AGP | -1.307643435 | 0.00087625 | AGP9 (ARABINOGALACTAN PROTEIN 9) | putative proline-rich protein (At2g14890) mRNA, complete |
estExt_fgenesh4_pg.C_LG_XVI0075 | AT1G62480 | Q9SXE9 | 30.3 | signalling.calcium | -1.307156661 | 0.002948727 | vacuolar calcium-binding protein-related |