top of page

Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00030850
AT1G12250
Q8H1Q1
35.1.5
not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein
-1.339258888
0.000774481
thylakoid lumenal protein-related
estExt_fgenesh4_pm.C_970001
AT3G15920
Q9LSB9
30.9
signalling.lipids
-1.33545405
0.001038907
phox (PX) domain-containing protein
estExt_fgenesh4_pm.C_290079
AT5G46630
O23140
29.3.4.99
protein.targeting.secretory pathway.unspecified
-1.334920196
0.004227773
clathrin adaptor complexes medium subunit family protein
clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes
estExt_Genewise1_v1.C_LG_I0230
AT1G79850
P16180
29.2.1.1.1.1.17
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S17
-1.329795181
0.003082822
RPS17 (ribosomal protein S17); structural constituent of ribosome
nuclear-encoded 30S chloroplast ribosomal protein S17
grail3.0003028702
AT2G21600
O48671
29.3.4.1
protein.targeting.secretory pathway.ER
-1.323603264
0.00010448
ATRER1B (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1B)
Key player of retrieval of ER membrane proteins
fgenesh4_pm.C_LG_I000253
AT5G49730
Q8RWS6
15.1
metal handling.acquisition
-1.315773399
0.002606204
ATFRO6/FRO6 (FERRIC REDUCTION OXIDASE 6); ferric-chelate reductase/ oxidoreductase
Encodes a putative ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner. However, in vitro assays in yeast have not shown ferric chelate reductase activity for this protein. T
gw1.163.69.1
AT3G44890
P25864
29.2.1.1.1.2.9
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L9
-1.315454444
0.002231882
RPL9 (ribosomal protein L9); structural constituent of ribosome
Plastid ribosomal protein CL9
gw1.II.1183.1
AT1G01510
O23702
27.3.34
RNA.regulation of transcription.Orphan family
-1.3152449
0.001483783
AN (ANGUSTIFOLIA)
Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction.
estExt_Genewise1_v1.C_LG_XIV0850
AT3G60900
Q9LZX4
10.5.1.1
cell wall.cell wall proteins.AGPs.AGP
-1.31521213
0.004197384
FLA10 (fasciclin-like arabinogalactan-protein 10)
eugene3.00061718
AT2G25810
O82316
34.19.2
transport.Major Intrinsic Proteins.TIP
-1.312477386
0.001647341
TIP4;1 (tonoplast intrinsic protein 4;1); water channel
eugene3.00012414
AT2G14890
Q9C5S0
10.5.1.1
cell wall.cell wall proteins.AGPs.AGP
-1.307643435
0.00087625
AGP9 (ARABINOGALACTAN PROTEIN 9)
putative proline-rich protein (At2g14890) mRNA, complete
estExt_fgenesh4_pg.C_LG_XVI0075
AT1G62480
Q9SXE9
30.3
signalling.calcium
-1.307156661
0.002948727
vacuolar calcium-binding protein-related
bottom of page