Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
gw1.II.884.1 | AT4G01995 | Q8W4C4 | 35.2 | not assigned.unknown | -1.119228197 | 0.001291252 | ||
grail3.0015031101 | AT1G67740 | O49347 | 1.1.1.2 | PS.lightreaction.photosystem II.PSII polypeptide subunits | -1.118107482 | 0.00220611 | PSBY (photosystem II BY) | PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood. |
estExt_fgenesh4_pg.C_LG_XVIII0989 | AT5G03790 | Q9LZR0 | 27.3.22 | RNA.regulation of transcription.HB,Homeobox transcription factor family | -1.117916426 | 0.002400893 | ATHB51/LMI1 (LATE MERISTEM IDENTITY1); DNA binding / transcription factor | Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. |
estExt_fgenesh4_pm.C_LG_X0841 | AT1G75270 | Q9FRL8 | 21.2.1 | redox.ascorbate and glutathione.ascorbate | -1.366764223 | 0.000524977 | DHAR2; glutathione dehydrogenase (ascorbate) | |
estExt_fgenesh4_pg.C_LG_II1020 | AT1G04820 | Q0WV25 | 31.1 | cell.organisation | -1.366460913 | 0.001267274 | TUA4 (tubulin alpha-4 chain) | Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. |
estExt_fgenesh4_pg.C_LG_V0623 | AT2G22570 | Q8S8F9 | 16.2 | secondary metabolism.phenylpropanoids | -1.362717903 | 0.001857398 | isochorismatase hydrolase family protein | |
eugene3.00090586 | AT2G15890 | Q9XIM0 | 35.2 | not assigned.unknown | -1.358168041 | 0.003304483 | MEE14 (maternal effect embryo arrest 14) | |
gw1.11561.1.1 | AT1G78380 | Q9ZRW8 | 26.9 | misc.glutathione S transferases | -1.354039201 | 0.000612713 | ATGSTU19 (GLUTATHIONE TRANSFERASE 8); glutathione transferase | Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention according to Wagner et al. (2002) The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. |
eugene3.00180737 | AT5G19670 | F4K2K9 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | -1.353108688 | 0.000557653 | exostosin family protein | |
gw1.XIV.1304.1 | AT4G00370 | Q8GX78 | 34.2 | transport.sugars | -1.352353303 | 0.001758928 | ANTR2 (anion transporter 2); organic anion transporter | |
gw1.VI.2058.1 | AT4G32260 | Q42139 | 1.1.4.9 | PS.lightreaction.ATP synthase.subunit B_ (ATPX) | -1.34941726 | 0.003236185 | ATP synthase family | |
eugene3.00141074 | AT2G04570 | Q9SJB4 | 26.28 | misc.GDSL-motif lipase | -1.347325325 | 0.002606158 | GDSL-motif lipase/hydrolase family protein |