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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
gw1.II.884.1
AT4G01995
Q8W4C4
35.2
not assigned.unknown
-1.119228197
0.001291252
grail3.0015031101
AT1G67740
O49347
1.1.1.2
PS.lightreaction.photosystem II.PSII polypeptide subunits
-1.118107482
0.00220611
PSBY (photosystem II BY)
PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood.
estExt_fgenesh4_pg.C_LG_XVIII0989
AT5G03790
Q9LZR0
27.3.22
RNA.regulation of transcription.HB,Homeobox transcription factor family
-1.117916426
0.002400893
ATHB51/LMI1 (LATE MERISTEM IDENTITY1); DNA binding / transcription factor
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
estExt_fgenesh4_pm.C_LG_X0841
AT1G75270
Q9FRL8
21.2.1
redox.ascorbate and glutathione.ascorbate
-1.366764223
0.000524977
DHAR2; glutathione dehydrogenase (ascorbate)
estExt_fgenesh4_pg.C_LG_II1020
AT1G04820
Q0WV25
31.1
cell.organisation
-1.366460913
0.001267274
TUA4 (tubulin alpha-4 chain)
Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers.
estExt_fgenesh4_pg.C_LG_V0623
AT2G22570
Q8S8F9
16.2
secondary metabolism.phenylpropanoids
-1.362717903
0.001857398
isochorismatase hydrolase family protein
eugene3.00090586
AT2G15890
Q9XIM0
35.2
not assigned.unknown
-1.358168041
0.003304483
MEE14 (maternal effect embryo arrest 14)
gw1.11561.1.1
AT1G78380
Q9ZRW8
26.9
misc.glutathione S transferases
-1.354039201
0.000612713
ATGSTU19 (GLUTATHIONE TRANSFERASE 8); glutathione transferase
Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention according to Wagner et al. (2002) The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.
eugene3.00180737
AT5G19670
F4K2K9
26.2
misc.UDP glucosyl and glucoronyl transferases
-1.353108688
0.000557653
exostosin family protein
gw1.XIV.1304.1
AT4G00370
Q8GX78
34.2
transport.sugars
-1.352353303
0.001758928
ANTR2 (anion transporter 2); organic anion transporter
gw1.VI.2058.1
AT4G32260
Q42139
1.1.4.9
PS.lightreaction.ATP synthase.subunit B_ (ATPX)
-1.34941726
0.003236185
ATP synthase family
eugene3.00141074
AT2G04570
Q9SJB4
26.28
misc.GDSL-motif lipase
-1.347325325
0.002606158
GDSL-motif lipase/hydrolase family protein
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