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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
fgenesh4_pm.C_LG_II000371
AT1G77490
Q42593
21.2.1
redox.ascorbate and glutathione.ascorbate
-1.156503197
0.000546151
TAPX; L-ascorbate peroxidase
Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
gw1.I.3925.1
AT4G34200
O49485
13.1.5.1.1
amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase
-1.152413081
0.001669559
EDA9 (embryo sac development arrest 9); NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase
gw1.VI.1805.1
AT3G22120
Q9LIE9
26.21
misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein
-1.148594167
0.002477485
CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN); lipid binding
cell wall-plasma membrane linker protein homolog (CWLP)
fgenesh4_pm.C_scaffold_44000028
AT3G13750
Q9SCW1
26.3.2
misc.gluco-, galacto- and mannosidases.beta-galactosidase
-1.148333799
0.00244894
BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase
beta-galactosidase, glycosyl hydrolase family 35
estExt_Genewise1_v1.C_LG_X4165
AT5G35630
Q43127
12.2.2
N-metabolism.ammonia metabolism.glutamine synthetase
-1.144870844
0.002309632
GS2 (GLUTAMINE SYNTHETASE 2); glutamate-ammonia ligase
chloroplastic glutamine synthetase
estExt_Genewise1_v1.C_LG_V4944
AT4G30100
Q9SZW3
28.1
DNA.synthesis/chromatin structure
-1.142325479
0.003841825
tRNA-splicing endonuclease positive effector-related
estExt_fgenesh4_pg.C_LG_V1470
AT1G75500
Q94AP3
33.99
development.unspecified
-1.138674569
0.002106639
nodulin MtN21 family protein
eugene3.00070971
AT2G23620
Q8S8S9
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
-1.129816464
0.001711289
esterase, putative
gw1.V.1967.1
AT1G76110
Q9SGS2
27.3.62
RNA.regulation of transcription.Nucleosome/chromatin assembly factor group
-1.127700487
0.000472543
high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein
estExt_fgenesh4_pm.C_1420001
AT4G03510
O64425
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
-1.126367567
0.00060882
RMA1 (Ring finger protein with Membrane Anchor 1); protein binding / ubiquitin-protein ligase/ zinc ion binding
RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.
gw1.X.4521.1
AT2G33450
O22795
29.2.1.1.1.2.28
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L28
-1.125558257
0.003035915
50S ribosomal protein L28, chloroplast (CL28)
estExt_fgenesh4_pm.C_LG_XVI0323
AT4G30080
Q93YR9
27.3.4
RNA.regulation of transcription.ARF, Auxin Response Factor family
-1.120402816
0.002385159
ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor
Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus.
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