Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_Genewise1_v1.C_280751 | AT2G36880 | Q9SJL8 | 13.1.3.4 | amino acid metabolism.synthesis.aspartate family.methionine | -1.189340692 | 0.003345429 | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase | |
estExt_Genewise1_v1.C_2020055 | AT1G79040 | P27202 | 1.1.1.2 | PS.lightreaction.photosystem II.PSII polypeptide subunits | -1.185454654 | 0.002408192 | PSBR (photosystem II subunit R) | Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ. |
estExt_fgenesh4_pm.C_LG_XIV0002 | AT2G22620 | F4IJK8 | 10.6.3 | cell wall.degradation.pectate lyases and polygalacturonases | -1.183694748 | 0.002729966 | lyase | |
estExt_Genewise1_v1.C_LG_VIII1306 | AT5G08670 | P83483 | 9.9 | mitochondrial electron transport / ATP synthesis.F1-ATPase | -1.177148072 | 0.003174944 | ATP synthase beta chain 1, mitochondrial | |
grail3.0045020302 | AT2G16850 | Q9ZVX8 | 34.19.1 | transport.Major Intrinsic Proteins.PIP | -1.176382731 | 0.001167666 | PIP2;8/PIP3B (plasma membrane intrinsic protein 2;8); water channel | |
fgenesh4_pg.C_LG_II002291 | AT5G16710 | Q8LE52 | 21.2.1 | redox.ascorbate and glutathione.ascorbate | -1.175927409 | 0.001441676 | DHAR3 (DEHYDROASCORBATE REDUCTASE 1); glutathione dehydrogenase (ascorbate) | The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. |
estExt_Genewise1_v1.C_LG_XVIII1941 | AT2G24940 | Q9SK39 | 21.2 | redox.ascorbate and glutathione | -1.173584754 | 0.001679196 | ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2); heme binding / transition metal ion binding | |
estExt_fgenesh4_pg.C_LG_IX0819 | AT5G64410 | Q9FME8 | 34.13 | transport.peptides and oligopeptides | -1.169526763 | 0.000502601 | ATOPT4 (oligopeptide transporter 4); oligopeptide transporter | oligopeptide transporter |
estExt_fgenesh4_pg.C_LG_I0880 | AT4G23496 | Q8LGD1 | 35.2 | not assigned.unknown | -1.168681538 | 0.003485947 | SP1L5 (SPIRAL1-LIKE5) | Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. |
grail3.0082000101 | AT1G69230 | Q9LE54 | 35.2 | not assigned.unknown | -1.167890628 | 0.00363505 | SP1L2 | SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion. |
gw1.148.129.1 | AT2G44300 | O64865 | 11.6 | lipid metabolism.lipid transfer proteins etc | -1.163926221 | 0.003517054 | lipid transfer protein-related | |
estExt_Genewise1_v1.C_LG_II1134 | AT4G08685 | Q9SZY5 | 20.2.99 | stress.abiotic.unspecified | -1.163036401 | 0.003820316 | SAH7 | Encodes a protein, expressed in leaves, with similarity to pollen allergens. |