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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_280751
AT2G36880
Q9SJL8
13.1.3.4
amino acid metabolism.synthesis.aspartate family.methionine
-1.189340692
0.003345429
MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase
estExt_Genewise1_v1.C_2020055
AT1G79040
P27202
1.1.1.2
PS.lightreaction.photosystem II.PSII polypeptide subunits
-1.185454654
0.002408192
PSBR (photosystem II subunit R)
Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.
estExt_fgenesh4_pm.C_LG_XIV0002
AT2G22620
F4IJK8
10.6.3
cell wall.degradation.pectate lyases and polygalacturonases
-1.183694748
0.002729966
lyase
estExt_Genewise1_v1.C_LG_VIII1306
AT5G08670
P83483
9.9
mitochondrial electron transport / ATP synthesis.F1-ATPase
-1.177148072
0.003174944
ATP synthase beta chain 1, mitochondrial
grail3.0045020302
AT2G16850
Q9ZVX8
34.19.1
transport.Major Intrinsic Proteins.PIP
-1.176382731
0.001167666
PIP2;8/PIP3B (plasma membrane intrinsic protein 2;8); water channel
fgenesh4_pg.C_LG_II002291
AT5G16710
Q8LE52
21.2.1
redox.ascorbate and glutathione.ascorbate
-1.175927409
0.001441676
DHAR3 (DEHYDROASCORBATE REDUCTASE 1); glutathione dehydrogenase (ascorbate)
The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.
estExt_Genewise1_v1.C_LG_XVIII1941
AT2G24940
Q9SK39
21.2
redox.ascorbate and glutathione
-1.173584754
0.001679196
ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2); heme binding / transition metal ion binding
estExt_fgenesh4_pg.C_LG_IX0819
AT5G64410
Q9FME8
34.13
transport.peptides and oligopeptides
-1.169526763
0.000502601
ATOPT4 (oligopeptide transporter 4); oligopeptide transporter
oligopeptide transporter
estExt_fgenesh4_pg.C_LG_I0880
AT4G23496
Q8LGD1
35.2
not assigned.unknown
-1.168681538
0.003485947
SP1L5 (SPIRAL1-LIKE5)
Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.
grail3.0082000101
AT1G69230
Q9LE54
35.2
not assigned.unknown
-1.167890628
0.00363505
SP1L2
SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.
gw1.148.129.1
AT2G44300
O64865
11.6
lipid metabolism.lipid transfer proteins etc
-1.163926221
0.003517054
lipid transfer protein-related
estExt_Genewise1_v1.C_LG_II1134
AT4G08685
Q9SZY5
20.2.99
stress.abiotic.unspecified
-1.163036401
0.003820316
SAH7
Encodes a protein, expressed in leaves, with similarity to pollen allergens.
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