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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0040020301
AT1G47410
Q9SX76
35.2
not assigned.unknown
-1.21270127
0.001104621
unknown protein
gw1.VII.2415.1
AT1G50320
Q8LD49
21.1
redox.thioredoxin
-1.210351963
0.002090534
ATHX (THIOREDOXIN X); thiol-disulfide exchange intermediate
encodes a prokaryotic thioredoxin
estExt_fgenesh4_pm.C_LG_XIV0110
AT2G45820
O80837
27.3.67
RNA.regulation of transcription.putative transcription regulator
-1.210186179
0.000543856
DNA-binding protein, putative
fgenesh4_pm.C_LG_XIII000297
AT2G43030
Q9SKX4
29.2.1.1.1.2.3
protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L3
-1.209187694
0.002913346
ribosomal protein L3 family protein
gw1.II.1559.1
AT1G22270
Q8LFJ5
35.2
not assigned.unknown
-1.202261229
0.002524807
estExt_fgenesh4_pg.C_LG_I1200
AT5G22000
Q9ZT42
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
-1.202192987
0.000684854
CIC7E11; protein binding / zinc ion binding
fgenesh4_pg.C_LG_VI000277
AT3G56650
Q9LXX5
1.1.1.2
PS.lightreaction.photosystem II.PSII polypeptide subunits
-1.197997779
0.002788077
thylakoid lumenal 20 kDa protein
estExt_Genewise1_v1.C_LG_X0725
AT5G54940
Q9FFT6
29.2.3
protein.synthesis.initiation
-1.19633998
0.001557191
eukaryotic translation initiation factor SUI1, putative
grail3.0089000701
AT5G67370
Q9FN15
35.2
not assigned.unknown
-1.195626889
0.002442316
eugene3.00091601
AT1G08180
Q9SGE2
35.2
not assigned.unknown
-1.192374261
0.001593047
grail3.0001108201
AT3G47070
Q9SD66
35.2
not assigned.unknown
-1.192354617
0.002074313
estExt_Genewise1_v1.C_LG_XVI1636
AT2G42320
A0A1P8B2E0
28.1
DNA.synthesis/chromatin structure
-1.189861746
0.002399119
nucleolar protein gar2-related
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