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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0013034101
AT4G32590
Q94AK9
1.1.5.2
PS.lightreaction.other electron carrier (ox/red).ferredoxin
-0.985678544
0.002385727
ferredoxin-related
gw1.VI.639.1
AT5G03880
Q940I2
35.2
not assigned.unknown
-1.237637195
0.00353861
gw1.21115.1.1
AT1G69523
Q941B1
26.6
misc.O-methyl transferases
-1.236717846
0.004062921
UbiE/COQ5 methyltransferase family protein
gw1.XV.2690.1
AT1G31260
Q8W245
34.12
transport.metal
-1.236184108
0.004257964
ZIP10 (ZINC TRANSPORTER 10 PRECURSOR); cation transporter
member of Fe(II) transporter isolog family
gw1.XVI.2702.1
AT5G03040
Q93ZH7
30.3
signalling.calcium
-1.227340807
0.00259445
IQD2 (IQ-domain 2); calmodulin binding
grail3.0001046201
AT1G49310
Q84W13
35.2
not assigned.unknown
-1.226742607
0.000233617
unknown protein
estExt_Genewise1_v1.C_LG_V0051
AT4G37925
Q2V2S7
1.1.6
PS.lightreaction.NADH DH
-1.222809698
0.001868666
NDH-M (SUBUNIT NDH-M OF NAD(P)H:PLASTOQUINONE DEHYDROGENASE COMPLEX)
Encodes subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
eugene3.00060738
AT3G09320
Q93VV0
27.3.99
RNA.regulation of transcription.unclassified
-1.221232478
0.000212823
zinc finger (DHHC type) family protein
eugene3.00111103
AT1G54290
Q94JV4
29.2.3
protein.synthesis.initiation
-1.221055029
0.000349249
eukaryotic translation initiation factor SUI1, putative
eugene3.00101529
AT1G69380
Q9C565
35.2
not assigned.unknown
-1.217328184
0.002535451
estExt_fgenesh4_kg.C_LG_I0088
AT2G14880
Q8RXG0
35.1
not assigned.no ontology
-1.216494995
0.004183637
SWIB complex BAF60b domain-containing protein
eugene3.00191042
AT1G11360
C0Z2J1
20.2.99
stress.abiotic.unspecified
-1.213473931
0.00041455
universal stress protein (USP) family protein
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