Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
grail3.0015017401 | AT3G03430 | Q9SRP7 | 30.3 | signalling.calcium | -1.029452754 | 0.002858621 | polcalcin, putative / calcium-binding pollen allergen, putative | |
gw1.XII.1231.1 | AT5G24470 | Q6LA42 | 27.3.66 | RNA.regulation of transcription.Psudo ARR transcription factor family | -1.02719151 | 0.003773923 | APRR5 (PSEUDO-RESPONSE REGULATOR 5); transcription regulator | Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. |
estExt_Genewise1_v1.C_LG_X3955 | AT3G16640 | P31265 | 33.99 | development.unspecified | -1.023463167 | 0.000819979 | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) | Encodes a protein homologous to TRANSCRIPTIONALLY CONTROLLED TUMOR PROTEIN (TCTP). |
gw1.XV.2234.1 | AT5G50600 | P0DKC5 | 26.22 | misc.short chain dehydrogenase/reductase (SDR) | -1.020212264 | 0.002115922 | short-chain dehydrogenase/reductase (SDR) family protein | |
grail3.0006033201 | AT1G68520 | Q8LG76 | 27.3.7 | RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family | -1.019323909 | 0.002703886 | zinc finger (B-box type) family protein | |
estExt_fgenesh4_pm.C_LG_VIII0258 | AT2G40100 | Q9S7W1 | 1.1.1.1 | PS.lightreaction.photosystem II.LHC-II | -1.018989685 | 0.003372131 | LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding | Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II |
fgenesh4_pg.C_LG_XII000841 | AT5G57020 | Q9LTR9 | 29.4 | protein.postranslational modification | -1.014282596 | 0.002138792 | NMT1 (N-MYRISTOYLTRANSFERASE 1) | Arabidopsis thaliana myristoyl-CoA:protein N-myristoyltransferase. |
eugene3.47280001 | AT1G17620 | Q9LNP3 | 35.2 | not assigned.unknown | -1.010900479 | 0.001929284 | ||
grail3.0022024402 | AT3G12560 | Q9C7B1 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | -1.005149761 | 0.001503504 | TRFL9 (TRF-LIKE 9); DNA binding | Encodes a telomeric DNA-binding protein. |
estExt_fgenesh4_pg.C_LG_X1165 | AT1G68660 | Q9SX29 | 29.2.1.1.3.2.1712 | protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L7/L12 | -0.995792381 | 0.00246147 | ||
grail3.0133008901 | AT2G18890 | O64619 | 29.4.1.56 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VI | -0.992211847 | 0.002630733 | protein kinase family protein | |
fgenesh4_pm.C_scaffold_163000009 | AT2G28190 | O78310 | 21.6 | redox.dismutases and catalases | -0.991282014 | 0.002014595 | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); copper, zinc superoxide dismutase | Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. |