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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0015017401
AT3G03430
Q9SRP7
30.3
signalling.calcium
-1.029452754
0.002858621
polcalcin, putative / calcium-binding pollen allergen, putative
gw1.XII.1231.1
AT5G24470
Q6LA42
27.3.66
RNA.regulation of transcription.Psudo ARR transcription factor family
-1.02719151
0.003773923
APRR5 (PSEUDO-RESPONSE REGULATOR 5); transcription regulator
Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.
estExt_Genewise1_v1.C_LG_X3955
AT3G16640
P31265
33.99
development.unspecified
-1.023463167
0.000819979
TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)
Encodes a protein homologous to TRANSCRIPTIONALLY CONTROLLED TUMOR PROTEIN (TCTP).
gw1.XV.2234.1
AT5G50600
P0DKC5
26.22
misc.short chain dehydrogenase/reductase (SDR)
-1.020212264
0.002115922
short-chain dehydrogenase/reductase (SDR) family protein
grail3.0006033201
AT1G68520
Q8LG76
27.3.7
RNA.regulation of transcription.C2C2(Zn) CO-like, Constans-like zinc finger family
-1.019323909
0.002703886
zinc finger (B-box type) family protein
estExt_fgenesh4_pm.C_LG_VIII0258
AT2G40100
Q9S7W1
1.1.1.1
PS.lightreaction.photosystem II.LHC-II
-1.018989685
0.003372131
LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding
Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II
fgenesh4_pg.C_LG_XII000841
AT5G57020
Q9LTR9
29.4
protein.postranslational modification
-1.014282596
0.002138792
NMT1 (N-MYRISTOYLTRANSFERASE 1)
Arabidopsis thaliana myristoyl-CoA:protein N-myristoyltransferase.
eugene3.47280001
AT1G17620
Q9LNP3
35.2
not assigned.unknown
-1.010900479
0.001929284
grail3.0022024402
AT3G12560
Q9C7B1
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
-1.005149761
0.001503504
TRFL9 (TRF-LIKE 9); DNA binding
Encodes a telomeric DNA-binding protein.
estExt_fgenesh4_pg.C_LG_X1165
AT1G68660
Q9SX29
29.2.1.1.3.2.1712
protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L7/L12
-0.995792381
0.00246147
grail3.0133008901
AT2G18890
O64619
29.4.1.56
protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VI
-0.992211847
0.002630733
protein kinase family protein
fgenesh4_pm.C_scaffold_163000009
AT2G28190
O78310
21.6
redox.dismutases and catalases
-0.991282014
0.002014595
CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); copper, zinc superoxide dismutase
Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals.
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