Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_pm.C_LG_XI0311 | AT1G61065 | Q8W576 | 35.2 | not assigned.unknown | -1.06215739 | 0.000987414 | ||
gw1.XIV.3121.1 | AT3G16920 | Q9LSP9 | 20.1 | stress.biotic | -1.061423187 | 0.002601569 | chitinase | |
estExt_Genewise1_v1.C_LG_III0271 | AT1G01620 | Q08733 | 34.19.1 | transport.Major Intrinsic Proteins.PIP | -1.060450382 | 0.003708258 | PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1;3); water channel | a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. |
grail3.0043005501 | AT3G55677 | Q2V3P0 | 35.2 | not assigned.unknown | -1.053423303 | 0.001834139 | ||
estExt_fgenesh4_pm.C_LG_XIV0257 | AT4G01850 | P17562 | 13.1.3.4.11 | amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase | -1.052794668 | 0.003402455 | MAT2/SAM-2 (S-adenosylmethionine synthetase 2); methionine adenosyltransferase | |
gw1.70.171.1 | AT1G04250 | P93830 | 27.3.40 | RNA.regulation of transcription.Aux/IAA family | -1.05220064 | 0.003588651 | AXR3 (AUXIN RESISTANT 3); transcription factor | Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. |
grail3.0076005601 | AT5G01870 | Q9LZV9 | 11.6 | lipid metabolism.lipid transfer proteins etc | -1.050605118 | 0.001767523 | lipid transfer protein, putative | |
eugene3.00050125 | AT5G65260 | Q9FJN9 | 27.1.3.17 | RNA.processing.3' end processing.PabN | -1.050006779 | 0.000180719 | polyadenylate-binding protein family protein / PABP family protein | |
gw1.VI.1016.1 | AT5G57035 | F4K964 | 29.4 | protein.postranslational modification | -1.047952022 | 0.003388069 | protein kinase family protein | |
grail3.0043013701 | AT1G67920 | Q9C9V8 | 35.2 | not assigned.unknown | -1.042069136 | 0.002825124 | ||
estExt_Genewise1_v1.C_660785 | AT1G06890 | Q8RXL8 | 35.1 | not assigned.no ontology | -1.035473972 | 0.004172496 | transporter-related | |
grail3.0035020701 | AT3G61460 | Q9XF92 | 17.3.3 | hormone metabolism.brassinosteroid.induced-regulated-responsive-activated | -1.030407587 | 0.002779223 | BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding | Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. |