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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pm.C_LG_XI0311
AT1G61065
Q8W576
35.2
not assigned.unknown
-1.06215739
0.000987414
gw1.XIV.3121.1
AT3G16920
Q9LSP9
20.1
stress.biotic
-1.061423187
0.002601569
chitinase
estExt_Genewise1_v1.C_LG_III0271
AT1G01620
Q08733
34.19.1
transport.Major Intrinsic Proteins.PIP
-1.060450382
0.003708258
PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1;3); water channel
a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.
grail3.0043005501
AT3G55677
Q2V3P0
35.2
not assigned.unknown
-1.053423303
0.001834139
estExt_fgenesh4_pm.C_LG_XIV0257
AT4G01850
P17562
13.1.3.4.11
amino acid metabolism.synthesis.aspartate family.methionine.S-adenosylmethionine synthetase
-1.052794668
0.003402455
MAT2/SAM-2 (S-adenosylmethionine synthetase 2); methionine adenosyltransferase
gw1.70.171.1
AT1G04250
P93830
27.3.40
RNA.regulation of transcription.Aux/IAA family
-1.05220064
0.003588651
AXR3 (AUXIN RESISTANT 3); transcription factor
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.
grail3.0076005601
AT5G01870
Q9LZV9
11.6
lipid metabolism.lipid transfer proteins etc
-1.050605118
0.001767523
lipid transfer protein, putative
eugene3.00050125
AT5G65260
Q9FJN9
27.1.3.17
RNA.processing.3' end processing.PabN
-1.050006779
0.000180719
polyadenylate-binding protein family protein / PABP family protein
gw1.VI.1016.1
AT5G57035
F4K964
29.4
protein.postranslational modification
-1.047952022
0.003388069
protein kinase family protein
grail3.0043013701
AT1G67920
Q9C9V8
35.2
not assigned.unknown
-1.042069136
0.002825124
estExt_Genewise1_v1.C_660785
AT1G06890
Q8RXL8
35.1
not assigned.no ontology
-1.035473972
0.004172496
transporter-related
grail3.0035020701
AT3G61460
Q9XF92
17.3.3
hormone metabolism.brassinosteroid.induced-regulated-responsive-activated
-1.030407587
0.002779223
BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding
Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
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