Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00050086 | AT1G01720 | Q39013 | 33.99 | development.unspecified | 2.186336029 | 0.002696686 | ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor | belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. |
gw1.I.9073.1 | AT4G11650 | P50700 | 20.2 | stress.abiotic | 2.219216184 | 0.003573415 | ATOSM34 (OSMOTIN 34) | osmotin-like protein |
fgenesh4_pg.C_scaffold_481000004 | AT5G45540 | Q9FHI2 | 35.2 | not assigned.unknown | 2.220102477 | 0.002360497 | ||
estExt_Genewise1_v1.C_62380001 | AT2G14610 | P33154 | 20.1 | stress.biotic | 2.257416871 | 0.001274801 | PR1 (PATHOGENESIS-RELATED GENE 1) | PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called PR-1-like, the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. |
estExt_Genewise1_v1.C_14600006 | AT1G24020 | Q93VR4 | 20.2.99 | stress.abiotic.unspecified | 2.26430473 | 0.000344671 | Bet v I allergen family protein | |
estExt_Genewise1_v1.C_13540001 | AT5G01600 | Q39101 | 15.2 | metal handling.binding, chelation and storage | 2.28131629 | 0.0000146 | ATFER1 (ferretin 1); ferric iron binding | Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. |
estExt_fgenesh4_pg.C_LG_XIII0199 | AT3G04720 | P43082 | 20.1 | stress.biotic | 2.293176327 | 0.001332712 | PR4 (PATHOGENESIS-RELATED 4) | Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. |
estExt_fgenesh4_pg.C_LG_I0450 | AT5G13930 | P13114 | 16.8.2.1 | secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase | 2.322072461 | 0.000677159 | CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase | Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. |
estExt_Genewise1_v1.C_LG_IV0305 | AT3G02230 | Q9SRT9 | 10.5.5 | cell wall.cell wall proteins.RGP | 2.363529254 | 0.001793986 | RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) | reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis |
estExt_Genewise1_v1.C_LG_V0127 | AT4G19950 | Q6DBH7 | 35.2 | not assigned.unknown | 2.402587833 | 0.000559228 | ||
gw1.5658.2.1 | AT5G42510 | Q9FIG6 | 20.1.7 | stress.biotic.PR-proteins | 2.431470159 | 0.000812747 | disease resistance-responsive family protein | |
gw1.I.8918.1 | AT4G11650 | P50700 | 20.2 | stress.abiotic | 2.470862344 | 0.003022215 | ATOSM34 (OSMOTIN 34) | osmotin-like protein |