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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00050086
AT1G01720
Q39013
33.99
development.unspecified
2.186336029
0.002696686
ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor
belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding.
gw1.I.9073.1
AT4G11650
P50700
20.2
stress.abiotic
2.219216184
0.003573415
ATOSM34 (OSMOTIN 34)
osmotin-like protein
fgenesh4_pg.C_scaffold_481000004
AT5G45540
Q9FHI2
35.2
not assigned.unknown
2.220102477
0.002360497
estExt_Genewise1_v1.C_62380001
AT2G14610
P33154
20.1
stress.biotic
2.257416871
0.001274801
PR1 (PATHOGENESIS-RELATED GENE 1)
PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called PR-1-like, the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.
estExt_Genewise1_v1.C_14600006
AT1G24020
Q93VR4
20.2.99
stress.abiotic.unspecified
2.26430473
0.000344671
Bet v I allergen family protein
estExt_Genewise1_v1.C_13540001
AT5G01600
Q39101
15.2
metal handling.binding, chelation and storage
2.28131629
0.0000146
ATFER1 (ferretin 1); ferric iron binding
Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide.
estExt_fgenesh4_pg.C_LG_XIII0199
AT3G04720
P43082
20.1
stress.biotic
2.293176327
0.001332712
PR4 (PATHOGENESIS-RELATED 4)
Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.
estExt_fgenesh4_pg.C_LG_I0450
AT5G13930
P13114
16.8.2.1
secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase
2.322072461
0.000677159
CHS (CHALCONE SYNTHASE); naringenin-chalcone synthase
Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
estExt_Genewise1_v1.C_LG_IV0305
AT3G02230
Q9SRT9
10.5.5
cell wall.cell wall proteins.RGP
2.363529254
0.001793986
RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)
reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis
estExt_Genewise1_v1.C_LG_V0127
AT4G19950
Q6DBH7
35.2
not assigned.unknown
2.402587833
0.000559228
gw1.5658.2.1
AT5G42510
Q9FIG6
20.1.7
stress.biotic.PR-proteins
2.431470159
0.000812747
disease resistance-responsive family protein
gw1.I.8918.1
AT4G11650
P50700
20.2
stress.abiotic
2.470862344
0.003022215
ATOSM34 (OSMOTIN 34)
osmotin-like protein
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