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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
gw1.X.5890.1
AT3G04920
Q9SS17
29.2.1.2.1.24
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S24
-1.091576657
0.000170497
40S ribosomal protein S24 (RPS24A)
grail3.0010043801
AT1G44191
A8MQW1
35.1
not assigned.no ontology
-1.090008064
0.00059173
DNA binding / ligand-dependent nuclear receptor
Encodes a ECA1 gametogenesis related family protein
estExt_Genewise1_v1.C_LG_XIV3195
AT2G43050
Q9SKX2
10.8.1
cell wall.pectin*esterases.PME
-1.088296467
0.003193454
pectinesterase family protein
estExt_Genewise1_v1.C_LG_I8285
AT1G31330
Q9SHE8
1.1.2.2
PS.lightreaction.photosystem I.PSI polypeptide subunits
-1.086071354
0.002504244
PSAF (photosystem I subunit F)
Encodes subunit F of photosystem I.
estExt_Genewise1_v1.C_LG_IV0987
AT2G21180
Q9SKP5
35.2
not assigned.unknown
-1.084512572
0.001835408
estExt_fgenesh4_pg.C_280161
AT2G37195
Q52K99
35.2
not assigned.unknown
-1.081343912
0.001385057
estExt_fgenesh4_pm.C_1070032
AT3G15480
Q9LDK1
35.2
not assigned.unknown
-1.081040829
0.001710418
eugene3.00040363
AT4G18780
Q8LPK5
10.2.1
cell wall.cellulose synthesis.cellulose synthase
-1.080673106
0.004070904
CESA8 (CELLULASE SYNTHASE 8); cellulose synthase/ transferase, transferring glycosyl groups
Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance.
grail3.0023002901
AT2G26580
Q8GW46
27.3.10
RNA.regulation of transcription.C2C2(Zn) YABBY family
-1.075403937
0.004258658
plant-specific transcription factor YABBY family protein
estExt_Genewise1_v1.C_LG_IX1362
AT2G21170
Q9SKP6
1.3.5
PS.calvin cycle.TPI
-1.069281349
0.003491279
TIM (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase
Encodes a nuclear triosephosphate isomerase.
grail3.0057010501
AT2G18050
Q3EBY3
28.1.3.1
DNA.synthesis/chromatin structure.histone.H1
-1.068436268
0.001753109
HIS1-3 (HISTONE H1-3); DNA binding
encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.
grail3.0130005601
AT2G15560
Q6NQ97
35.2
not assigned.unknown
-1.068143663
0.003012185
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