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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pm.C_LG_VI0635
AT2G05830
Q9ZUG4
29.2.3
protein.synthesis.initiation
-1.117313561
0.003925048
eukaryotic translation initiation factor 2B family protein / eIF-2B family protein
estExt_Genewise1_v1.C_LG_VII3787
AT3G51050
F4J381
35.1
not assigned.no ontology
-1.117017921
0.002727691
FG-GAP repeat-containing protein
gw1.41.572.1
AT3G52960
Q949U7
21.5
redox.peroxiredoxin
-1.116317789
0.002321534
peroxiredoxin type 2, putative
eugene3.14820001
AT2G47590
Q8LB72
30.11
signalling.light
-1.115436363
0.002773654
PHR2 (PHOTOLYASE/BLUE-LIGHT RECEPTOR 2)
photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,
gw1.X.3496.1
AT1G66240
Q94BT9
15.2
metal handling.binding, chelation and storage
-1.112446886
0.001888692
ATX1; metal ion binding
estExt_fgenesh4_pg.C_LG_II1049
AT1G44920
Q9LPD7
35.2
not assigned.unknown
-1.112360554
0.000804551
estExt_fgenesh4_pm.C_LG_II0164
AT1G75280
P52577
16.8.5.1
secondary metabolism.flavonoids.isoflavones.isoflavone reductase
-1.109873268
0.002884299
isoflavone reductase, putative
isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.
estExt_fgenesh4_pm.C_LG_II0495
AT5G65670
Q38827
27.3.40
RNA.regulation of transcription.Aux/IAA family
-1.109642188
0.003068562
IAA9 (indoleacetic acid-induced protein 9); transcription factor
auxin (indole-3-acetic acid) induced gene
estExt_Genewise1_v1.C_LG_II2093
AT4G09720
Q948K8
30.5
signalling.G-proteins
-1.105828186
0.004185608
AtRABG3a; GTP binding
estExt_Genewise1_v1.C_LG_IV1582
AT1G11840
O65398
24.2
Biodegradation of Xenobiotics.lactoylglutathione lyase
-1.105584396
0.001206292
ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase
Encodes a glyoxalase I homolog ATGLX1.
estExt_fgenesh4_pg.C_LG_IV0751
AT1G65890
Q9SS00
11.1.8
lipid metabolism.FA synthesis and FA elongation.acyl coa ligase
-1.093686407
0.003559473
acyl-activating enzyme 12 (AAE12)
estExt_fgenesh4_pg.C_LG_II1640
AT2G46820
Q8LCA1
1.1.2.2
PS.lightreaction.photosystem I.PSI polypeptide subunits
-1.09200885
0.00278953
TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA)
Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits.
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