Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_pm.C_LG_VI0635 | AT2G05830 | Q9ZUG4 | 29.2.3 | protein.synthesis.initiation | -1.117313561 | 0.003925048 | eukaryotic translation initiation factor 2B family protein / eIF-2B family protein | |
estExt_Genewise1_v1.C_LG_VII3787 | AT3G51050 | F4J381 | 35.1 | not assigned.no ontology | -1.117017921 | 0.002727691 | FG-GAP repeat-containing protein | |
gw1.41.572.1 | AT3G52960 | Q949U7 | 21.5 | redox.peroxiredoxin | -1.116317789 | 0.002321534 | peroxiredoxin type 2, putative | |
eugene3.14820001 | AT2G47590 | Q8LB72 | 30.11 | signalling.light | -1.115436363 | 0.002773654 | PHR2 (PHOTOLYASE/BLUE-LIGHT RECEPTOR 2) | photolyase/blue light photoreceptor PHR2 (PHR2) mRNA, |
gw1.X.3496.1 | AT1G66240 | Q94BT9 | 15.2 | metal handling.binding, chelation and storage | -1.112446886 | 0.001888692 | ATX1; metal ion binding | |
estExt_fgenesh4_pg.C_LG_II1049 | AT1G44920 | Q9LPD7 | 35.2 | not assigned.unknown | -1.112360554 | 0.000804551 | ||
estExt_fgenesh4_pm.C_LG_II0164 | AT1G75280 | P52577 | 16.8.5.1 | secondary metabolism.flavonoids.isoflavones.isoflavone reductase | -1.109873268 | 0.002884299 | isoflavone reductase, putative | isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress. |
estExt_fgenesh4_pm.C_LG_II0495 | AT5G65670 | Q38827 | 27.3.40 | RNA.regulation of transcription.Aux/IAA family | -1.109642188 | 0.003068562 | IAA9 (indoleacetic acid-induced protein 9); transcription factor | auxin (indole-3-acetic acid) induced gene |
estExt_Genewise1_v1.C_LG_II2093 | AT4G09720 | Q948K8 | 30.5 | signalling.G-proteins | -1.105828186 | 0.004185608 | AtRABG3a; GTP binding | |
estExt_Genewise1_v1.C_LG_IV1582 | AT1G11840 | O65398 | 24.2 | Biodegradation of Xenobiotics.lactoylglutathione lyase | -1.105584396 | 0.001206292 | ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase | Encodes a glyoxalase I homolog ATGLX1. |
estExt_fgenesh4_pg.C_LG_IV0751 | AT1G65890 | Q9SS00 | 11.1.8 | lipid metabolism.FA synthesis and FA elongation.acyl coa ligase | -1.093686407 | 0.003559473 | acyl-activating enzyme 12 (AAE12) | |
estExt_fgenesh4_pg.C_LG_II1640 | AT2G46820 | Q8LCA1 | 1.1.2.2 | PS.lightreaction.photosystem I.PSI polypeptide subunits | -1.09200885 | 0.00278953 | TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) | Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits. |