Species & Dataset
Experiment
Foliar Ozone Injury
-
Populus trichocarpa
-
Common name: Poplar cottonwood
-
Family: Salicaceae
-
Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
-
Tissue: Shoot leaves
-
Ozone concentration: 16.7 nL L-1 (Control)
-
93.1 nL L-1 (Treatment)
-
Ozone exposure: Whole experimental period
-
Sampling time: End of exposure period
-
Platform: Microarray
-
Year of study: 2010
-
Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_pm.C_LG_X0573 | AT5G49510 | P57741 | 29.6 | protein.folding | -0.840997463 | 0.001640498 | VHL binding protein, putative / prefoldin, putative | |
estExt_fgenesh4_pg.C_LG_V1127 | AT1G34000 | Q9FEC1 | 1.1.2.1 | PS.lightreaction.photosystem I.LHC-I | -0.837660896 | 0.003090623 | OHP2 (ONE-HELIX PROTEIN 2) | Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions. |
eugene3.00700152 | AT1G08830 | P24704 | 21.6 | redox.dismutases and catalases | -0.837579639 | 0.001945664 | CSD1 (copper/zinc superoxide dismutase 1); copper, zinc superoxide dismutase | Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. |
grail3.0001137701 | AT2G28110 | Q9ZUV3 | 10.3.2 | cell wall.hemicellulose synthesis.glucuronoxylan | -0.836010354 | 0.002229684 | FRA8 (FRAGILE FIBER8); transferase | Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings. |
eugene3.00021116 | AT5G67360 | O65351 | 29.5.1 | protein.degradation.subtilases | -0.826328959 | 0.003033796 | ARA12; subtilase | subtilisin-like protease that has been located in stem and siliques but not roots. |
estExt_Genewise1_v1.C_LG_XIII1233 | AT1G08830 | P24704 | 21.6 | redox.dismutases and catalases | -0.824451932 | 0.002248159 | CSD1 (copper/zinc superoxide dismutase 1); copper, zinc superoxide dismutase | Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. |
grail3.0007003501 | AT5G57040 | Q9LTR8 | 24.2 | Biodegradation of Xenobiotics.lactoylglutathione lyase | -0.820073132 | 0.003145403 | lactoylglutathione lyase family protein / glyoxalase I family protein | |
estExt_fgenesh4_pg.C_LG_XVI0885 | AT2G36870 | Q9SJL9 | 10.7 | cell wall.modification | -0.818369902 | 0.004024608 | xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative | |
estExt_Genewise1_v1.C_LG_X6513 | AT2G01450 | Q84M93 | 30.6 | signalling.MAP kinases | -0.81816791 | 0.001348339 | ATMPK17 (Arabidopsis thaliana MAP kinase 17); MAP kinase | member of MAP Kinase |
estExt_fgenesh4_pm.C_LG_VIII0195 | AT5G02500 | P22953 | 20.2.1 | stress.abiotic.heat | -0.812668162 | 0.003004856 | HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding | encodes a member of heat shock protein 70 family. |
gw1.VIII.1035.1 | AT1G14890 | Q9LQU1 | 26.18 | misc.invertase/pectin methylesterase inhibitor family protein | -0.809787163 | 0.002249808 | invertase/pectin methylesterase inhibitor family protein | |
eugene3.00140120 | AT4G00050 | Q8GZ38 | 27.3.6 | RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family | -1.117499668 | 0.003258238 | UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor |