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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pm.C_LG_X0573
AT5G49510
P57741
29.6
protein.folding
-0.840997463
0.001640498
VHL binding protein, putative / prefoldin, putative
estExt_fgenesh4_pg.C_LG_V1127
AT1G34000
Q9FEC1
1.1.2.1
PS.lightreaction.photosystem I.LHC-I
-0.837660896
0.003090623
OHP2 (ONE-HELIX PROTEIN 2)
Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions.
eugene3.00700152
AT1G08830
P24704
21.6
redox.dismutases and catalases
-0.837579639
0.001945664
CSD1 (copper/zinc superoxide dismutase 1); copper, zinc superoxide dismutase
Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals.
grail3.0001137701
AT2G28110
Q9ZUV3
10.3.2
cell wall.hemicellulose synthesis.glucuronoxylan
-0.836010354
0.002229684
FRA8 (FRAGILE FIBER8); transferase
Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.
eugene3.00021116
AT5G67360
O65351
29.5.1
protein.degradation.subtilases
-0.826328959
0.003033796
ARA12; subtilase
subtilisin-like protease that has been located in stem and siliques but not roots.
estExt_Genewise1_v1.C_LG_XIII1233
AT1G08830
P24704
21.6
redox.dismutases and catalases
-0.824451932
0.002248159
CSD1 (copper/zinc superoxide dismutase 1); copper, zinc superoxide dismutase
Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals.
grail3.0007003501
AT5G57040
Q9LTR8
24.2
Biodegradation of Xenobiotics.lactoylglutathione lyase
-0.820073132
0.003145403
lactoylglutathione lyase family protein / glyoxalase I family protein
estExt_fgenesh4_pg.C_LG_XVI0885
AT2G36870
Q9SJL9
10.7
cell wall.modification
-0.818369902
0.004024608
xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative
estExt_Genewise1_v1.C_LG_X6513
AT2G01450
Q84M93
30.6
signalling.MAP kinases
-0.81816791
0.001348339
ATMPK17 (Arabidopsis thaliana MAP kinase 17); MAP kinase
member of MAP Kinase
estExt_fgenesh4_pm.C_LG_VIII0195
AT5G02500
P22953
20.2.1
stress.abiotic.heat
-0.812668162
0.003004856
HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding
encodes a member of heat shock protein 70 family.
gw1.VIII.1035.1
AT1G14890
Q9LQU1
26.18
misc.invertase/pectin methylesterase inhibitor family protein
-0.809787163
0.002249808
invertase/pectin methylesterase inhibitor family protein
eugene3.00140120
AT4G00050
Q8GZ38
27.3.6
RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
-1.117499668
0.003258238
UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor
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