Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_kg.C_LG_II0003 | AT1G20340 | P42699 | 1.1.5.1 | PS.lightreaction.other electron carrier (ox/red).plastocyanin | -0.887792498 | 0.002707957 | DRT112 (DNA-damage-repair/toleration protein 112); copper ion binding / electron carrier | recombination and DNA-damage resistance protein (DRT112) |
estExt_fgenesh4_pg.C_LG_I2092 | AT5G62680 | Q9LV10 | 34.13 | transport.peptides and oligopeptides | -0.88420142 | 0.003860153 | proton-dependent oligopeptide transport (POT) family protein | |
gw1.XVII.474.1 | AT3G24120 | Q94A57 | 27.3.20 | RNA.regulation of transcription.G2-like transcription factor family, GARP | -0.884169025 | 0.002735377 | myb family transcription factor | |
gw1.44.644.1 | AT1G01490 | O03982 | 28.2 | DNA.repair | -0.882407254 | 0.001874765 | heavy-metal-associated domain-containing protein | |
grail3.0010047002 | AT1G68660 | Q9SX29 | 29.2.1.1.3.2.1712 | protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L7/L12 | -0.877933782 | 0.002602441 | ||
grail3.0161001401 | AT1G51200 | Q8H0X0 | 27.3.99 | RNA.regulation of transcription.unclassified | -0.877544022 | 0.001082475 | zinc finger (AN1-like) family protein | |
gw1.IV.950.1 | AT4G34830 | 35.1.5 | not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein | -0.87649596 | 0.003567949 | binding | ||
grail3.0010026002 | AT1G69230 | Q9LE54 | 35.2 | not assigned.unknown | -0.875239169 | 0.001051309 | SP1L2 | SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion. |
fgenesh4_pg.C_LG_VIII000845 | AT5G61040 | Q9FNR0 | 35.2 | not assigned.unknown | -0.864023998 | 0.003347572 | ||
estExt_fgenesh4_pm.C_LG_XII0286 | AT4G22220 | O49627 | 29.8 | protein.assembly and cofactor ligation | -0.863019753 | 0.004122598 | ISU1 (Iron-sulfur cluster assembly complex protein) | Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein. |
estExt_fgenesh4_pg.C_LG_IX0893 | AT5G12320 | Q8GWI1 | 31.1 | cell.organisation | -0.862498627 | 0.001879468 | ankyrin repeat family protein | |
estExt_fgenesh4_pm.C_LG_VIII0291 | AT2G40370 | Q9SIY8 | 16.10 | secondary metabolism.simple phenols | -0.855061174 | 0.003589656 | LAC5 (laccase 5); copper ion binding / oxidoreductase | putative laccase, a member of laccase family of genes (17 members in Arabidopsis). |