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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_kg.C_LG_II0003
AT1G20340
P42699
1.1.5.1
PS.lightreaction.other electron carrier (ox/red).plastocyanin
-0.887792498
0.002707957
DRT112 (DNA-damage-repair/toleration protein 112); copper ion binding / electron carrier
recombination and DNA-damage resistance protein (DRT112)
estExt_fgenesh4_pg.C_LG_I2092
AT5G62680
Q9LV10
34.13
transport.peptides and oligopeptides
-0.88420142
0.003860153
proton-dependent oligopeptide transport (POT) family protein
gw1.XVII.474.1
AT3G24120
Q94A57
27.3.20
RNA.regulation of transcription.G2-like transcription factor family, GARP
-0.884169025
0.002735377
myb family transcription factor
gw1.44.644.1
AT1G01490
O03982
28.2
DNA.repair
-0.882407254
0.001874765
heavy-metal-associated domain-containing protein
grail3.0010047002
AT1G68660
Q9SX29
29.2.1.1.3.2.1712
protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L7/L12
-0.877933782
0.002602441
grail3.0161001401
AT1G51200
Q8H0X0
27.3.99
RNA.regulation of transcription.unclassified
-0.877544022
0.001082475
zinc finger (AN1-like) family protein
gw1.IV.950.1
AT4G34830
35.1.5
not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein
-0.87649596
0.003567949
binding
grail3.0010026002
AT1G69230
Q9LE54
35.2
not assigned.unknown
-0.875239169
0.001051309
SP1L2
SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.
fgenesh4_pg.C_LG_VIII000845
AT5G61040
Q9FNR0
35.2
not assigned.unknown
-0.864023998
0.003347572
estExt_fgenesh4_pm.C_LG_XII0286
AT4G22220
O49627
29.8
protein.assembly and cofactor ligation
-0.863019753
0.004122598
ISU1 (Iron-sulfur cluster assembly complex protein)
Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.
estExt_fgenesh4_pg.C_LG_IX0893
AT5G12320
Q8GWI1
31.1
cell.organisation
-0.862498627
0.001879468
ankyrin repeat family protein
estExt_fgenesh4_pm.C_LG_VIII0291
AT2G40370
Q9SIY8
16.10
secondary metabolism.simple phenols
-0.855061174
0.003589656
LAC5 (laccase 5); copper ion binding / oxidoreductase
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
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