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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
gw1.140.324.1
AT1G30760
Q93ZA3
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
-0.930021976
0.003556933
FAD-binding domain-containing protein
grail3.0008008301
AT1G67360
Q9FYF7
35.1
not assigned.no ontology
-0.928189788
0.00224595
rubber elongation factor (REF) family protein
eugene3.00190136
AT1G58440
Q9SM02
17.3.1.2.99
hormone metabolism.brassinosteroid.synthesis-degradation.sterols.other
-0.924309035
0.00384798
XF1; oxidoreductase
Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.
gw1.IX.2034.1
AT3G50440
Q8S9K8
35.1
not assigned.no ontology
-0.912945259
0.00229925
hydrolase
estExt_fgenesh4_pg.C_LG_VII0502
AT4G39730
O65660
35.1
not assigned.no ontology
-0.911165984
0.002125813
lipid-associated family protein
gw1.204.41.1
AT1G29395
Q94AL8
35.1
not assigned.no ontology
-0.909382019
0.001484777
COR414-TM1 (cold regulated 414 thylakoid membrane 1)
encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.
eugene3.00021295
AT2G44670
O80506
33.99
development.unspecified
-0.905120942
0.000824667
senescence-associated protein-related
eugene3.00050506
AT5G67210
Q9FH92
35.2
not assigned.unknown
-0.903634343
0.004238435
nucleic acid binding / pancreatic ribonuclease
fgenesh4_pm.C_LG_III000187
AT4G16780
Q05466
27.3.22
RNA.regulation of transcription.HB,Homeobox transcription factor family
-0.899693342
0.002123342
ATHB-2 (Homeobox-leucine zipper protein HAT4); DNA binding / transcription factor
eugene3.00120058
AT3G17760
Q9LSH2
13.1.1.1.1
amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase
-0.895077679
0.004184581
glutamate decarboxylase, putative
grail3.0019029901
AT1G07660
A8MRV1
28.1.3.2.4
DNA.synthesis/chromatin structure.histone.core.H4
-0.894165882
0.003399572
histone H4
gw1.I.1980.1
AT5G62690
Q56YW9
31.1
cell.organisation
-0.889615449
0.000866181
TUB2 (Tubulin beta-2); structural molecule
encodes tubulin beta-2/beta-3 chain
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