Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
gw1.140.324.1 | AT1G30760 | Q93ZA3 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | -0.930021976 | 0.003556933 | FAD-binding domain-containing protein | |
grail3.0008008301 | AT1G67360 | Q9FYF7 | 35.1 | not assigned.no ontology | -0.928189788 | 0.00224595 | rubber elongation factor (REF) family protein | |
eugene3.00190136 | AT1G58440 | Q9SM02 | 17.3.1.2.99 | hormone metabolism.brassinosteroid.synthesis-degradation.sterols.other | -0.924309035 | 0.00384798 | XF1; oxidoreductase | Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity. |
gw1.IX.2034.1 | AT3G50440 | Q8S9K8 | 35.1 | not assigned.no ontology | -0.912945259 | 0.00229925 | hydrolase | |
estExt_fgenesh4_pg.C_LG_VII0502 | AT4G39730 | O65660 | 35.1 | not assigned.no ontology | -0.911165984 | 0.002125813 | lipid-associated family protein | |
gw1.204.41.1 | AT1G29395 | Q94AL8 | 35.1 | not assigned.no ontology | -0.909382019 | 0.001484777 | COR414-TM1 (cold regulated 414 thylakoid membrane 1) | encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. |
eugene3.00021295 | AT2G44670 | O80506 | 33.99 | development.unspecified | -0.905120942 | 0.000824667 | senescence-associated protein-related | |
eugene3.00050506 | AT5G67210 | Q9FH92 | 35.2 | not assigned.unknown | -0.903634343 | 0.004238435 | nucleic acid binding / pancreatic ribonuclease | |
fgenesh4_pm.C_LG_III000187 | AT4G16780 | Q05466 | 27.3.22 | RNA.regulation of transcription.HB,Homeobox transcription factor family | -0.899693342 | 0.002123342 | ATHB-2 (Homeobox-leucine zipper protein HAT4); DNA binding / transcription factor | |
eugene3.00120058 | AT3G17760 | Q9LSH2 | 13.1.1.1.1 | amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase | -0.895077679 | 0.004184581 | glutamate decarboxylase, putative | |
grail3.0019029901 | AT1G07660 | A8MRV1 | 28.1.3.2.4 | DNA.synthesis/chromatin structure.histone.core.H4 | -0.894165882 | 0.003399572 | histone H4 | |
gw1.I.1980.1 | AT5G62690 | Q56YW9 | 31.1 | cell.organisation | -0.889615449 | 0.000866181 | TUB2 (Tubulin beta-2); structural molecule | encodes tubulin beta-2/beta-3 chain |