Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_pm.C_LG_X0605 | AT1G69230 | Q9LE54 | 35.2 | not assigned.unknown | -0.972640505 | 0.000787294 | SP1L2 | SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion. |
estExt_fgenesh4_pg.C_LG_III1085 | AT4G23496 | Q8LGD1 | 35.2 | not assigned.unknown | -0.967279264 | 0.00174832 | SP1L5 (SPIRAL1-LIKE5) | Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. |
estExt_fgenesh4_pg.C_LG_VI0110 | AT1G62480 | Q9SXE9 | 30.3 | signalling.calcium | -0.966073037 | 0.002664839 | vacuolar calcium-binding protein-related | |
estExt_fgenesh4_pm.C_LG_VI0311 | AT3G53990 | Q8LC99 | 20.2.2 | stress.abiotic.cold | -0.954828263 | 0.001689917 | universal stress protein (USP) family protein | |
estExt_fgenesh4_pg.C_LG_X0791 | AT2G32090 | Q9SKZ0 | 24.2 | Biodegradation of Xenobiotics.lactoylglutathione lyase | -0.95074895 | 0.004007583 | lactoylglutathione lyase family protein / glyoxalase I family protein | |
grail3.0024031501 | AT2G41530 | Q8LAS8 | 25 | C1-metabolism | -0.940912084 | 0.001565674 | esterase, putative | |
estExt_fgenesh4_pg.C_LG_I1397 | AT1G52220 | Q9M812 | 35.2 | not assigned.unknown | -0.940897082 | 0.002559858 | ||
grail3.0027014001 | AT5G12330 | Q94CK9 | 33.99 | development.unspecified | -0.939828181 | 0.001504304 | LRP1 (LATERAL ROOT PRIMORDIUM 1) | A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. |
gw1.70.142.1 | AT1G72030 | 26.24 | misc.GCN5-related N-acetyltransferase | -0.937910195 | 0.001670877 | GCN5-related N-acetyltransferase (GNAT) family protein | ||
grail3.0003027102 | AT1G75380 | Q9FWS6 | 20.2.4 | stress.abiotic.touch/wounding | -0.933334503 | 0.001253941 | wound-responsive protein-related | |
estExt_fgenesh4_pm.C_LG_II1050 | AT1G14900 | Q43386 | 28.1 | DNA.synthesis/chromatin structure | -0.932108409 | 0.002777394 | high-mobility-group protein / HMG-I/Y protein | Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. |
eugene3.00010621 | AT4G20090 | O49436 | 35.1.5 | not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein | -0.931657238 | 0.000400778 | EMB1025 (EMBRYO DEFECTIVE 1025); binding |