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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pm.C_LG_X0605
AT1G69230
Q9LE54
35.2
not assigned.unknown
-0.972640505
0.000787294
SP1L2
SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.
estExt_fgenesh4_pg.C_LG_III1085
AT4G23496
Q8LGD1
35.2
not assigned.unknown
-0.967279264
0.00174832
SP1L5 (SPIRAL1-LIKE5)
Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.
estExt_fgenesh4_pg.C_LG_VI0110
AT1G62480
Q9SXE9
30.3
signalling.calcium
-0.966073037
0.002664839
vacuolar calcium-binding protein-related
estExt_fgenesh4_pm.C_LG_VI0311
AT3G53990
Q8LC99
20.2.2
stress.abiotic.cold
-0.954828263
0.001689917
universal stress protein (USP) family protein
estExt_fgenesh4_pg.C_LG_X0791
AT2G32090
Q9SKZ0
24.2
Biodegradation of Xenobiotics.lactoylglutathione lyase
-0.95074895
0.004007583
lactoylglutathione lyase family protein / glyoxalase I family protein
grail3.0024031501
AT2G41530
Q8LAS8
25
C1-metabolism
-0.940912084
0.001565674
esterase, putative
estExt_fgenesh4_pg.C_LG_I1397
AT1G52220
Q9M812
35.2
not assigned.unknown
-0.940897082
0.002559858
grail3.0027014001
AT5G12330
Q94CK9
33.99
development.unspecified
-0.939828181
0.001504304
LRP1 (LATERAL ROOT PRIMORDIUM 1)
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin.
gw1.70.142.1
AT1G72030
26.24
misc.GCN5-related N-acetyltransferase
-0.937910195
0.001670877
GCN5-related N-acetyltransferase (GNAT) family protein
grail3.0003027102
AT1G75380
Q9FWS6
20.2.4
stress.abiotic.touch/wounding
-0.933334503
0.001253941
wound-responsive protein-related
estExt_fgenesh4_pm.C_LG_II1050
AT1G14900
Q43386
28.1
DNA.synthesis/chromatin structure
-0.932108409
0.002777394
high-mobility-group protein / HMG-I/Y protein
Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA.
eugene3.00010621
AT4G20090
O49436
35.1.5
not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein
-0.931657238
0.000400778
EMB1025 (EMBRYO DEFECTIVE 1025); binding
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