Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00081537 | AT5G43330 | P57106 | 8.2.9 | TCA / org transformation.other organic acid transformatons.cyt MDH | 0.684625772 | 0.002615598 | malate dehydrogenase, cytosolic, putative | |
fgenesh4_pg.C_LG_III000072 | AT1G71220 | Q0WL80 | 29.7.4 | protein.glycosylation.UDP-glucose glycoprotein glucosyltransferase | 0.68761352 | 0.003373669 | UDP-glucose:glycoprotein glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups | |
estExt_fgenesh4_pg.C_LG_XIII0421 | AT1G50740 | Q9C6T7 | 35.2 | not assigned.unknown | 0.69336031 | 0.00253273 | ||
estExt_Genewise1_v1.C_1710010 | AT2G18740 | Q9ZV45 | 27.1 | RNA.processing | 0.6970281 | 0.002565868 | small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative | |
gw1.I.15.1 | AT3G26420 | Q9LIN3 | 27.4 | RNA.RNA binding | 0.697813912 | 0.002708427 | ATRZ-1A; RNA binding / nucleotide binding | Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance. |
estExt_fgenesh4_pm.C_LG_IV0208 | AT5G16110 | Q9LF17 | 35.2 | not assigned.unknown | 0.698485014 | 0.00263505 | ||
eugene3.00150364 | AT1G48630 | Q9C4Z6 | 30.5 | signalling.G-proteins | 0.702849237 | 0.002546658 | guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative | |
estExt_fgenesh4_pm.C_280146 | AT3G52880 | Q9LFA3 | 21.2 | redox.ascorbate and glutathione | 0.707867088 | 0.002929227 | ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1); monodehydroascorbate reductase (NADH) | Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 |
estExt_fgenesh4_pg.C_LG_I1718 | AT1G76440 | Q9S842 | 35.2 | not assigned.unknown | 0.708335285 | 0.003751181 | ||
eugene3.00010810 | AT3G61640 | Q9M373 | 10.5.1.1 | cell wall.cell wall proteins.AGPs.AGP | -0.980654978 | 0.003307698 | AGP20 (ARABINOGALACTAN PROTEIN 20) | |
grail3.0063002001 | AT2G45330 | Q0WRN9 | 33.99 | development.unspecified | -0.978198211 | 0.001636934 | EMB1067 (EMBRYO DEFECTIVE 1067); tRNA 2-phosphotransferase | |
estExt_fgenesh4_pg.C_LG_XI0775 | AT2G34190 | Q94C70 | 34.99 | transport.misc | -0.97384988 | 0.000417906 | xanthine/uracil permease family protein |