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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00081537
AT5G43330
P57106
8.2.9
TCA / org transformation.other organic acid transformatons.cyt MDH
0.684625772
0.002615598
malate dehydrogenase, cytosolic, putative
fgenesh4_pg.C_LG_III000072
AT1G71220
Q0WL80
29.7.4
protein.glycosylation.UDP-glucose glycoprotein glucosyltransferase
0.68761352
0.003373669
UDP-glucose:glycoprotein glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups
estExt_fgenesh4_pg.C_LG_XIII0421
AT1G50740
Q9C6T7
35.2
not assigned.unknown
0.69336031
0.00253273
estExt_Genewise1_v1.C_1710010
AT2G18740
Q9ZV45
27.1
RNA.processing
0.6970281
0.002565868
small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative
gw1.I.15.1
AT3G26420
Q9LIN3
27.4
RNA.RNA binding
0.697813912
0.002708427
ATRZ-1A; RNA binding / nucleotide binding
Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance.
estExt_fgenesh4_pm.C_LG_IV0208
AT5G16110
Q9LF17
35.2
not assigned.unknown
0.698485014
0.00263505
eugene3.00150364
AT1G48630
Q9C4Z6
30.5
signalling.G-proteins
0.702849237
0.002546658
guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative
estExt_fgenesh4_pm.C_280146
AT3G52880
Q9LFA3
21.2
redox.ascorbate and glutathione
0.707867088
0.002929227
ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1); monodehydroascorbate reductase (NADH)
Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2
estExt_fgenesh4_pg.C_LG_I1718
AT1G76440
Q9S842
35.2
not assigned.unknown
0.708335285
0.003751181
eugene3.00010810
AT3G61640
Q9M373
10.5.1.1
cell wall.cell wall proteins.AGPs.AGP
-0.980654978
0.003307698
AGP20 (ARABINOGALACTAN PROTEIN 20)
grail3.0063002001
AT2G45330
Q0WRN9
33.99
development.unspecified
-0.978198211
0.001636934
EMB1067 (EMBRYO DEFECTIVE 1067); tRNA 2-phosphotransferase
estExt_fgenesh4_pg.C_LG_XI0775
AT2G34190
Q94C70
34.99
transport.misc
-0.97384988
0.000417906
xanthine/uracil permease family protein
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