Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_fgenesh4_pg.C_14770002 | AT4G23700 | Q9SUQ7 | 34.12 | transport.metal | -0.645020105 | 0.004041193 | ATCHX17 (CATION/H+ EXCHANGER 17); monovalent cation:proton antiporter | member of Putative Na+/H+ antiporter family |
gw1.VI.2059.1 | AT4G32272 | A8MRY9 | 35.1 | not assigned.no ontology | -0.63993361 | 0.004200701 | ||
estExt_Genewise1_v1.C_LG_XIV3377 | AT2G32520 | O80889 | 26.1 | misc.misc2 | -0.639621337 | 0.004143425 | dienelactone hydrolase family protein | |
estExt_Genewise1_v1.C_LG_II0922 | AT4G40030 | P59169 | 28.1.3.2.3 | DNA.synthesis/chromatin structure.histone.core.H3 | -0.415517807 | 0.00182909 | histone H3.2 | |
estExt_fgenesh4_pg.C_188960001 | AT4G02890 | Q3E7T8 | 29.5.11.1 | protein.degradation.ubiquitin.ubiquitin | -0.085107913 | 0.002435117 | UBQ14 (ubiquitin 14); protein binding | Polyubiquitin gene containing 4 ubiquitin repeats. |
estExt_Genewise1_v1.C_280409 | AT3G09630 | Q9SF40 | 29.2.1.2.2.141 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L4/L1 | -0.052033894 | 0.002729915 | 60S ribosomal protein L4/L1 (RPL4A) | |
estExt_fgenesh4_pg.C_LG_II0928 | AT1G22480 | Q9SK90 | 26.19 | misc.plastocyanin-like | -0.040109507 | 0.001908803 | plastocyanin-like domain-containing protein | |
estExt_fgenesh4_pg.C_LG_V1315 | AT3G54560 | O23628 | 28.1.3.2.1 | DNA.synthesis/chromatin structure.histone.core.H2A | 0.071821436 | 0.001994425 | histone H2A.F/Z | |
estExt_Genewise1_v1.C_1420036 | AT3G09390 | P25860 | 15.2 | metal handling.binding, chelation and storage | 0.644906093 | 0.003047835 | MT2A (METALLOTHIONEIN 2A) | metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage |
gw1.VIII.591.1 | AT3G26340 | Q9LIP2 | 29.5.11.20 | protein.degradation.ubiquitin.proteasom | 0.649632243 | 0.003529187 | 20S proteasome beta subunit E, putative | |
estExt_fgenesh4_pg.C_LG_II2554 | AT5G43970 | Q9FNC9 | 29.3.2 | protein.targeting.mitochondria | 0.657451606 | 0.003985091 | TOM22-V (TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V) | Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion. |
gw1.XV.2932.1 | AT4G22680 | Q94GA6 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 0.677268113 | 0.003147488 | MYB85 (myb domain protein 85); DNA binding / transcription factor | Encodes a putative transcription factor (MYB85). |