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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pg.C_14770002
AT4G23700
Q9SUQ7
34.12
transport.metal
-0.645020105
0.004041193
ATCHX17 (CATION/H+ EXCHANGER 17); monovalent cation:proton antiporter
member of Putative Na+/H+ antiporter family
gw1.VI.2059.1
AT4G32272
A8MRY9
35.1
not assigned.no ontology
-0.63993361
0.004200701
estExt_Genewise1_v1.C_LG_XIV3377
AT2G32520
O80889
26.1
misc.misc2
-0.639621337
0.004143425
dienelactone hydrolase family protein
estExt_Genewise1_v1.C_LG_II0922
AT4G40030
P59169
28.1.3.2.3
DNA.synthesis/chromatin structure.histone.core.H3
-0.415517807
0.00182909
histone H3.2
estExt_fgenesh4_pg.C_188960001
AT4G02890
Q3E7T8
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
-0.085107913
0.002435117
UBQ14 (ubiquitin 14); protein binding
Polyubiquitin gene containing 4 ubiquitin repeats.
estExt_Genewise1_v1.C_280409
AT3G09630
Q9SF40
29.2.1.2.2.141
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L4/L1
-0.052033894
0.002729915
60S ribosomal protein L4/L1 (RPL4A)
estExt_fgenesh4_pg.C_LG_II0928
AT1G22480
Q9SK90
26.19
misc.plastocyanin-like
-0.040109507
0.001908803
plastocyanin-like domain-containing protein
estExt_fgenesh4_pg.C_LG_V1315
AT3G54560
O23628
28.1.3.2.1
DNA.synthesis/chromatin structure.histone.core.H2A
0.071821436
0.001994425
histone H2A.F/Z
estExt_Genewise1_v1.C_1420036
AT3G09390
P25860
15.2
metal handling.binding, chelation and storage
0.644906093
0.003047835
MT2A (METALLOTHIONEIN 2A)
metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage
gw1.VIII.591.1
AT3G26340
Q9LIP2
29.5.11.20
protein.degradation.ubiquitin.proteasom
0.649632243
0.003529187
20S proteasome beta subunit E, putative
estExt_fgenesh4_pg.C_LG_II2554
AT5G43970
Q9FNC9
29.3.2
protein.targeting.mitochondria
0.657451606
0.003985091
TOM22-V (TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V)
Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.
gw1.XV.2932.1
AT4G22680
Q94GA6
27.3.25
RNA.regulation of transcription.MYB domain transcription factor family
0.677268113
0.003147488
MYB85 (myb domain protein 85); DNA binding / transcription factor
Encodes a putative transcription factor (MYB85).
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