top of page

Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_LG_XIV3815
AT2G04410
F4IV84
35.2
not assigned.unknown
-0.733807137
0.00212526
grail3.0035024401
AT2G46225
Q8S8M5
31.1
cell.organisation
-0.731782171
0.001810239
ABI1L1 (ABI-1-LIKE 1)
Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching.
estExt_fgenesh4_pg.C_LG_IV1320
AT1G75390
C0Z2L5
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
-0.726378551
0.003283235
bZIP transcription factor family protein
estExt_Genewise1_v1.C_LG_VI1108
AT2G29150
Q9ZW03
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
-0.719415679
0.004171272
tropinone reductase, putative / tropine dehydrogenase, putative
estExt_Genewise1_v1.C_LG_I9848
AT5G24690
Q0WKZ9
35.2
not assigned.unknown
-0.701497425
0.004145839
estExt_fgenesh4_pg.C_LG_III0921
AT1G12310
Q94AZ4
29.4
protein.postranslational modification
-0.700646063
0.002479458
calmodulin, putative
grail3.0035028601
AT1G01360
Q84MC7
35.2
not assigned.unknown
-0.699870617
0.003820852
estExt_Genewise1_v1.C_LG_IV1055
AT4G38690
Q9SZP6
11.9.3
lipid metabolism.lipid degradation.lysophospholipases
-0.684871867
0.003641285
1-phosphatidylinositol phosphodiesterase-related
eugene3.00130566
AT1G55340
Q6NKU3
35.2
not assigned.unknown
-0.683981126
0.003202293
gw1.XI.359.1
AT1G51100
Q9C685
35.2
not assigned.unknown
-0.673989369
0.00420511
eugene3.00130695
AT5G45350
Q39115
35.1.42
not assigned.no ontology.proline rich family
-0.67317148
0.003435773
proline-rich family protein
grail3.0007002601
AT4G29340
Q38904
31.1
cell.organisation
-0.654812631
0.004163179
PRF4 (PROFILIN 4); actin binding
Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining.
bottom of page