Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_Genewise1_v1.C_LG_XIV3815 | AT2G04410 | F4IV84 | 35.2 | not assigned.unknown | -0.733807137 | 0.00212526 | ||
grail3.0035024401 | AT2G46225 | Q8S8M5 | 31.1 | cell.organisation | -0.731782171 | 0.001810239 | ABI1L1 (ABI-1-LIKE 1) | Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. |
estExt_fgenesh4_pg.C_LG_IV1320 | AT1G75390 | C0Z2L5 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | -0.726378551 | 0.003283235 | bZIP transcription factor family protein | |
estExt_Genewise1_v1.C_LG_VI1108 | AT2G29150 | Q9ZW03 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | -0.719415679 | 0.004171272 | tropinone reductase, putative / tropine dehydrogenase, putative | |
estExt_Genewise1_v1.C_LG_I9848 | AT5G24690 | Q0WKZ9 | 35.2 | not assigned.unknown | -0.701497425 | 0.004145839 | ||
estExt_fgenesh4_pg.C_LG_III0921 | AT1G12310 | Q94AZ4 | 29.4 | protein.postranslational modification | -0.700646063 | 0.002479458 | calmodulin, putative | |
grail3.0035028601 | AT1G01360 | Q84MC7 | 35.2 | not assigned.unknown | -0.699870617 | 0.003820852 | ||
estExt_Genewise1_v1.C_LG_IV1055 | AT4G38690 | Q9SZP6 | 11.9.3 | lipid metabolism.lipid degradation.lysophospholipases | -0.684871867 | 0.003641285 | 1-phosphatidylinositol phosphodiesterase-related | |
eugene3.00130566 | AT1G55340 | Q6NKU3 | 35.2 | not assigned.unknown | -0.683981126 | 0.003202293 | ||
gw1.XI.359.1 | AT1G51100 | Q9C685 | 35.2 | not assigned.unknown | -0.673989369 | 0.00420511 | ||
eugene3.00130695 | AT5G45350 | Q39115 | 35.1.42 | not assigned.no ontology.proline rich family | -0.67317148 | 0.003435773 | proline-rich family protein | |
grail3.0007002601 | AT4G29340 | Q38904 | 31.1 | cell.organisation | -0.654812631 | 0.004163179 | PRF4 (PROFILIN 4); actin binding | Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining. |