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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0021029701
AT1G62480
Q9SXE9
30.3
signalling.calcium
-0.794460929
0.002876788
vacuolar calcium-binding protein-related
grail3.0064002701
AT4G05320
Q8H159
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
-0.794067922
0.003509863
UBQ10 (POLYUBIQUITIN 10); protein binding
One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.
estExt_Genewise1_v1.C_LG_XVI2679
AT2G37090
Q9ZQC6
10.3.2
cell wall.hemicellulose synthesis.glucuronoxylan
-0.792231982
0.000943875
IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups
The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.
estExt_fgenesh4_kg.C_LG_X0015
AT5G14740
P42737
8.3
TCA / org transformation.carbonic anhydrases
-0.791567746
0.002519753
CA2 (BETA CARBONIC ANHYDRASE 2); carbonate dehydratase/ zinc ion binding
Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
fgenesh4_pg.C_LG_XVIII000183
AT5G07950
Q8LA67
1.1.5.2
PS.lightreaction.other electron carrier (ox/red).ferredoxin
-0.787369412
0.002270496
estExt_fgenesh4_pg.C_LG_III0079
AT1G25290
F4ICF4
35.1
not assigned.no ontology
-0.774450522
0.004009396
rhomboid family protein
grail3.0009008501
AT1G05380
Q9ZW00
27.3.63
RNA.regulation of transcription.PHD finger transcription factor
-0.764413983
0.001914673
DNA binding
grail3.0025023802
AT5G01650
F4K9G5
35.1
not assigned.no ontology
-0.752543494
0.004233836
macrophage migration inhibitory factor family protein / MIF family protein
estExt_fgenesh4_pg.C_LG_II1494
AT5G12370
X5JA13
31.4
cell.vesicle transport
-0.746600173
0.003633068
SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
estExt_Genewise1_v1.C_LG_VI0741
AT5G02560
Q9LZ46
28.1.3.2.1
DNA.synthesis/chromatin structure.histone.core.H2A
-0.745855282
0.002236611
histone H2A, putative
eugene3.00180824
AT1G07660
A8MRV1
28.1.3.2.4
DNA.synthesis/chromatin structure.histone.core.H4
-0.74471611
0.00286594
histone H4
gw1.III.2689.1
AT1G72640
Q6NMC1
35.2
not assigned.unknown
-0.738523145
0.002900608
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