Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00121130 | AT5G52390 | Q9FHC1 | 30.1 | signalling.in sugar and nutrient physiology | 1.903790278 | 0.000716713 | photoassimilate-responsive protein, putative | |
estExt_fgenesh4_pg.C_LG_X0484 | AT3G04120 | P25858 | 4.1.8 | glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH) | 1.915430248 | 0.000471439 | GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase | encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS. |
grail3.0009044702 | AT1G17710 | Q9FZ62 | 26.13 | misc.acid and other phosphatases | 1.949624384 | 0.000035 | phosphoric monoester hydrolase | |
eugene3.00160180 | AT3G09270 | Q9SR36 | 26.9 | misc.glutathione S transferases | 1.970440475 | 0.000108888 | ATGSTU8 (Arabidopsis thaliana Glutathione S-transferase (class tau) 8); glutathione transferase | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). |
fgenesh4_pg.C_scaffold_29000012 | AT1G72310 | Q9XF63 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 1.97132437 | 0.000165563 | ATL3 (Arabidopsis T?xicos en Levadura 3); protein binding / zinc ion binding | Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). |
grail3.0023033201 | AT5G01600 | Q39101 | 15.2 | metal handling.binding, chelation and storage | 1.979132378 | 0.000257495 | ATFER1 (ferretin 1); ferric iron binding | Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. |
estExt_fgenesh4_pg.C_280066 | AT3G43190 | Q9LXL5 | 2.2.1.5 | major CHO metabolism.degradation.sucrose.Susy | 2.024956669 | 0.0000318 | SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups | Encodes a protein with sucrose synthase activity (SUS4). |
estExt_Genewise1_v1.C_LG_XI1801 | AT1G24020 | Q93VR4 | 20.2.99 | stress.abiotic.unspecified | 2.031395596 | 0.000833617 | Bet v I allergen family protein | |
estExt_Genewise1_v1.C_LG_I1127 | AT1G07440 | P0DKI3 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 2.057299581 | 0.000364068 | tropinone reductase, putative / tropine dehydrogenase, putative | |
gw1.XIV.108.1 | AT5G43940 | Q96533 | 26.11 | misc.alcohol dehydrogenases | 2.10395321 | 0.002171075 | ADH2 (ALCOHOL DEHYDROGENASE 2); formaldehyde dehydrogenase (glutathione) | Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. |
estExt_Genewise1_v1.C_LG_II4045 | AT3G07220 | Q9SFV2 | 27.3.48 | RNA.regulation of transcription.FHA transcription factor | 2.118279366 | 0.004011266 | transcriptional activator, putative | |
gw1.IX.2492.1 | AT3G43740 | Q6NQP4 | 35.1 | not assigned.no ontology | 2.15277752 | 0.0000309 | leucine-rich repeat family protein |