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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00121130
AT5G52390
Q9FHC1
30.1
signalling.in sugar and nutrient physiology
1.903790278
0.000716713
photoassimilate-responsive protein, putative
estExt_fgenesh4_pg.C_LG_X0484
AT3G04120
P25858
4.1.8
glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH)
1.915430248
0.000471439
GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase
encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.
grail3.0009044702
AT1G17710
Q9FZ62
26.13
misc.acid and other phosphatases
1.949624384
0.000035
phosphoric monoester hydrolase
eugene3.00160180
AT3G09270
Q9SR36
26.9
misc.glutathione S transferases
1.970440475
0.000108888
ATGSTU8 (Arabidopsis thaliana Glutathione S-transferase (class tau) 8); glutathione transferase
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
fgenesh4_pg.C_scaffold_29000012
AT1G72310
Q9XF63
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
1.97132437
0.000165563
ATL3 (Arabidopsis T?xicos en Levadura 3); protein binding / zinc ion binding
Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).
grail3.0023033201
AT5G01600
Q39101
15.2
metal handling.binding, chelation and storage
1.979132378
0.000257495
ATFER1 (ferretin 1); ferric iron binding
Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide.
estExt_fgenesh4_pg.C_280066
AT3G43190
Q9LXL5
2.2.1.5
major CHO metabolism.degradation.sucrose.Susy
2.024956669
0.0000318
SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups
Encodes a protein with sucrose synthase activity (SUS4).
estExt_Genewise1_v1.C_LG_XI1801
AT1G24020
Q93VR4
20.2.99
stress.abiotic.unspecified
2.031395596
0.000833617
Bet v I allergen family protein
estExt_Genewise1_v1.C_LG_I1127
AT1G07440
P0DKI3
26.8
misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
2.057299581
0.000364068
tropinone reductase, putative / tropine dehydrogenase, putative
gw1.XIV.108.1
AT5G43940
Q96533
26.11
misc.alcohol dehydrogenases
2.10395321
0.002171075
ADH2 (ALCOHOL DEHYDROGENASE 2); formaldehyde dehydrogenase (glutathione)
Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid.
estExt_Genewise1_v1.C_LG_II4045
AT3G07220
Q9SFV2
27.3.48
RNA.regulation of transcription.FHA transcription factor
2.118279366
0.004011266
transcriptional activator, putative
gw1.IX.2492.1
AT3G43740
Q6NQP4
35.1
not assigned.no ontology
2.15277752
0.0000309
leucine-rich repeat family protein
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