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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_LG_XII0934
AT2G36170
B9DHA6
29.2.1.2.2.40
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L40
0.78887141
0.002756568
ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)
fgenesh4_pm.C_LG_VIII000713
AT5G43310
F4K5Y5
30.11.1
signalling.light.COP9 signalosome
0.791335205
0.002891437
COP1-interacting protein-related
estExt_Genewise1_v1.C_LG_XIV2179
AT2G47110
P59232
29.5.11
protein.degradation.ubiquitin
0.79768478
0.003394703
UBQ6 (ubiquitin 6); protein binding
polyubiquitin gene
estExt_fgenesh4_pg.C_LG_XI0909
AT3G15000
Q9LKA5
35.1
not assigned.no ontology
0.804359151
0.002583581
eugene3.00020526
AT2G32060
Q9SKZ3
29.2.1.2.1.12
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S12
0.804451581
0.001888319
40S ribosomal protein S12 (RPS12C)
estExt_fgenesh4_pg.C_640219
AT2G20580
Q9SIV2
29.5.11.20
protein.degradation.ubiquitin.proteasom
0.805551657
0.002209724
AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding
encoding the RPN subunits of the 26S proteasome
grail3.0008019901
AT1G09590
Q43291
29.2.1.2.2.21
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L21
0.809646862
0.003663608
60S ribosomal protein L21 (RPL21A)
estExt_fgenesh4_pg.C_LG_VI0095
AT3G26040
F4JBC7
35.1
not assigned.no ontology
-0.801322523
0.002181655
transferase family protein
eugene3.00160262
AT3G56680
Q9LET8
35.2
not assigned.unknown
-0.8002097
0.001446444
nucleic acid binding
eugene3.00090180
AT2G27180
Q9SHT0
35.2
not assigned.unknown
-0.799781805
0.00391112
grail3.0013025102
AT4G29340
Q38904
31.1
cell.organisation
-0.79721792
0.002443308
PRF4 (PROFILIN 4); actin binding
Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining.
fgenesh4_pg.C_LG_IX000814
AT4G21860
Q9C5C8
29.4
protein.postranslational modification
-0.794729069
0.002258963
methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein
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