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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
gw1.XI.2381.1
AT4G21310
O81898
35.2
not assigned.unknown
0.765801495
0.002454477
gw1.XII.577.1
AT5G61640
Q9FKF7
29.4
protein.postranslational modification
0.76597794
0.003941195
PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1); protein-methionine-S-oxide reductase
ubiquitous enzyme that repairs oxidatively damaged proteins
grail3.0019011103
AT2G27530
P59230
29.2.1.2.2.510
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10A
0.767316553
0.003240616
60S ribosomal protein L10A (RPL10aB)
gw1.4469.2.1
AT1G28110
Q93Y09
29.5.5
protein.degradation.serine protease
0.767842551
0.001854546
SCPL45; serine carboxypeptidase
eugene3.45490001
AT5G04800
Q9LZ17
29.2.1.2.1.17
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S17
0.770899374
0.002265298
40S ribosomal protein S17 (RPS17D)
estExt_fgenesh4_pg.C_LG_V1618
AT4G35190
Q8LBB7
35.2
not assigned.unknown
0.772830198
0.003938614
eugene3.00010913
AT1G63460
Q8LBU2
21.2.2
redox.ascorbate and glutathione.glutathione
0.774521623
0.003793172
glutathione peroxidase, putative
estExt_fgenesh4_pg.C_LG_XIX0692
AT1G09645
Q6GKX8
35.2
not assigned.unknown
0.778352266
0.0041231
estExt_fgenesh4_kg.C_LG_VI0058
AT2G39390
O80626
29.2.1.2.2.35
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35
0.779071048
0.002324626
60S ribosomal protein L35 (RPL35B)
estExt_Genewise1_v1.C_LG_III1770
AT1G31970
Q9C551
29.2.2.3.5
protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.DExD-box helicases
0.780209412
0.003263801
DEAD/DEAH box helicase, putative
gw1.X.4789.1
AT1G67430
P51413
29.2.1.2.2.17
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17
0.781706431
0.003126853
60S ribosomal protein L17 (RPL17B)
eugene3.00570219
AT5G66680
Q944K2
29.7
protein.glycosylation
0.787193573
0.002541505
DGL1 (defective glycosylation 1); dolichyl-diphosphooligosaccharide-protein glycotransferase
Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.
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