Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
gw1.XI.2381.1 | AT4G21310 | O81898 | 35.2 | not assigned.unknown | 0.765801495 | 0.002454477 | ||
gw1.XII.577.1 | AT5G61640 | Q9FKF7 | 29.4 | protein.postranslational modification | 0.76597794 | 0.003941195 | PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1); protein-methionine-S-oxide reductase | ubiquitous enzyme that repairs oxidatively damaged proteins |
grail3.0019011103 | AT2G27530 | P59230 | 29.2.1.2.2.510 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L10A | 0.767316553 | 0.003240616 | 60S ribosomal protein L10A (RPL10aB) | |
gw1.4469.2.1 | AT1G28110 | Q93Y09 | 29.5.5 | protein.degradation.serine protease | 0.767842551 | 0.001854546 | SCPL45; serine carboxypeptidase | |
eugene3.45490001 | AT5G04800 | Q9LZ17 | 29.2.1.2.1.17 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S17 | 0.770899374 | 0.002265298 | 40S ribosomal protein S17 (RPS17D) | |
estExt_fgenesh4_pg.C_LG_V1618 | AT4G35190 | Q8LBB7 | 35.2 | not assigned.unknown | 0.772830198 | 0.003938614 | ||
eugene3.00010913 | AT1G63460 | Q8LBU2 | 21.2.2 | redox.ascorbate and glutathione.glutathione | 0.774521623 | 0.003793172 | glutathione peroxidase, putative | |
estExt_fgenesh4_pg.C_LG_XIX0692 | AT1G09645 | Q6GKX8 | 35.2 | not assigned.unknown | 0.778352266 | 0.0041231 | ||
estExt_fgenesh4_kg.C_LG_VI0058 | AT2G39390 | O80626 | 29.2.1.2.2.35 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35 | 0.779071048 | 0.002324626 | 60S ribosomal protein L35 (RPL35B) | |
estExt_Genewise1_v1.C_LG_III1770 | AT1G31970 | Q9C551 | 29.2.2.3.5 | protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.DExD-box helicases | 0.780209412 | 0.003263801 | DEAD/DEAH box helicase, putative | |
gw1.X.4789.1 | AT1G67430 | P51413 | 29.2.1.2.2.17 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17 | 0.781706431 | 0.003126853 | 60S ribosomal protein L17 (RPL17B) | |
eugene3.00570219 | AT5G66680 | Q944K2 | 29.7 | protein.glycosylation | 0.787193573 | 0.002541505 | DGL1 (defective glycosylation 1); dolichyl-diphosphooligosaccharide-protein glycotransferase | Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins. |