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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
fgenesh4_pg.C_LG_V000190
AT2G22250
Q9SIE1
13.1.1.2.1
amino acid metabolism.synthesis.central amino acid metabolism.aspartate.aspartate aminotransferase
0.75310122
0.002236164
AAT/ATAAT/MEE17 (maternal effect embryo arrest 17); aspartate transaminase
estExt_fgenesh4_pm.C_280132
AT2G36530
P25696
4.1.13
glycolysis.cytosolic branch.enolase
0.753134754
0.002020806
LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase
Involved in light-dependent cold tolerance and encodes an enolase.
estExt_fgenesh4_pg.C_LG_II1803
AT3G62420
Q9LZP8
27.3.35
RNA.regulation of transcription.bZIP transcription factor family
0.753379614
0.001334468
ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53); DNA binding / sequence-specific DNA binding / transcription factor
Encodes a group-S bZIP transcription factor. Forms heterodimers with group-C bZIP transcription factors. The heterodimers bind to the ACTCAT cis-element of proline dehydrogenase gene.
estExt_fgenesh4_pg.C_LG_XVII0366
AT1G26880
Q42351
29.2.1.2.2.34
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34
0.754406116
0.002377585
60S ribosomal protein L34 (RPL34A)
estExt_fgenesh4_pg.C_LG_III0677
AT4G10770
O82485
34.13
transport.peptides and oligopeptides
0.754948002
0.003676495
ATOPT7 (oligopeptide transporter 7); oligopeptide transporter
oligopeptide transporter
fgenesh4_pm.C_LG_IX000568
AT3G54140
Q9M390
34.13
transport.peptides and oligopeptides
0.757342205
0.002652433
proton-dependent oligopeptide transport (POT) family protein
estExt_fgenesh4_kg.C_LG_IV0022
AT2G36620
Q42347
29.2.1.2.2.24
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L24
0.757807986
0.001873873
RPL24A (RIBOSOMAL PROTEIN L24); structural constituent of ribosome
RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).
estExt_Genewise1_v1.C_LG_I7944
AT5G13430
Q94JS0
9.5
mitochondrial electron transport / ATP synthesis.cytochrome c reductase
0.758678517
0.003126864
ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative
eugene3.00080332
AT5G42300
Q9FGZ9
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
0.760425762
0.003389319
ubiquitin family protein
estExt_Genewise1_v1.C_1330112
AT1G09150
Q8L7N2
29.1
protein.aa activation
0.761331425
0.003015981
pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
estExt_fgenesh4_pg.C_LG_II2454
AT2G21660
Q03250
27.4
RNA.RNA binding
0.762027884
0.003579037
ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding
Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold.
estExt_fgenesh4_pm.C_LG_XVI0055
AT3G56860
Q9LES2
27.4
RNA.RNA binding
0.763975382
0.002547551
UBA2A; RNA binding
encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3-UTRs and contributing to the stabilization of mRNAs in the nucleus.
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