Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_Genewise1_v1.C_2730019 | AT5G43330 | P57106 | 8.2.9 | TCA / org transformation.other organic acid transformatons.cyt MDH | 0.722577761 | 0.002878445 | malate dehydrogenase, cytosolic, putative | |
eugene3.00081703 | AT1G24510 | O04450 | 29.4 | protein.postranslational modification | 0.722695673 | 0.00287392 | T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative | |
eugene3.00012012 | AT5G14460 | Q0WVR7 | 23.5.2 | nucleotide metabolism.deoxynucleotide metabolism.pseudouridine synthase | 0.723536111 | 0.002131172 | pseudouridylate synthase TruB family protein | |
estExt_Genewise1_v1.C_LG_XI3222 | AT2G42740 | P42795 | 29.2.1.2.2.16 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L16 | 0.736441371 | 0.002150846 | RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome | encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. |
eugene3.00660043 | AT5G22770 | Q8LPL6 | 31.4 | cell.vesicle transport | 0.737267385 | 0.003593151 | ALPHA-ADR (ALPHA-ADAPTIN); binding / structural molecule | |
estExt_fgenesh4_pg.C_LG_VIII0948 | AT3G06700 | Q9M7X7 | 29.2.1.2.2.29 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L29 | 0.738710248 | 0.003233183 | 60S ribosomal protein L29 (RPL29A) | |
gw1.VII.769.1 | AT1G30890 | Q94BQ9 | 35.1 | not assigned.no ontology | 0.739206637 | 0.003172588 | integral membrane HRF1 family protein | |
gw1.I.5773.1 | AT2G17420 | Q39242 | 21.1 | redox.thioredoxin | 0.739294637 | 0.004248294 | NTRA (NADPH-dependent thioredoxin reductase 2) | NADPH-dependent thioredoxin reductase, major cytosolic isoform |
estExt_fgenesh4_pg.C_LG_XIV0697 | AT1G02870 | Q8RWK5 | 35.2 | not assigned.unknown | 0.740495807 | 0.002252208 | ||
grail3.0005049701 | AT4G00100 | P59224 | 29.2.1.2.1.13 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S13 | 0.74082215 | 0.003132666 | ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of ribosome | Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development |
grail3.0001025501 | AT4G38460 | Q39108 | 16.1.1.10 | secondary metabolism.isoprenoids.non-mevalonate pathway.geranylgeranyl pyrophosphate synthase | 0.744061405 | 0.001289615 | GGR (GERANYLGERANYL REDUCTASE); farnesyltranstransferase | |
estExt_fgenesh4_pg.C_LG_X1324 | AT5G49480 | Q9FDX6 | 30.3 | signalling.calcium | 0.752709208 | 0.002785508 | ATCP1 (CA2+-BINDING PROTEIN 1); calcium ion binding | AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl. |