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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_2730019
AT5G43330
P57106
8.2.9
TCA / org transformation.other organic acid transformatons.cyt MDH
0.722577761
0.002878445
malate dehydrogenase, cytosolic, putative
eugene3.00081703
AT1G24510
O04450
29.4
protein.postranslational modification
0.722695673
0.00287392
T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative
eugene3.00012012
AT5G14460
Q0WVR7
23.5.2
nucleotide metabolism.deoxynucleotide metabolism.pseudouridine synthase
0.723536111
0.002131172
pseudouridylate synthase TruB family protein
estExt_Genewise1_v1.C_LG_XI3222
AT2G42740
P42795
29.2.1.2.2.16
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L16
0.736441371
0.002150846
RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome
encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.
eugene3.00660043
AT5G22770
Q8LPL6
31.4
cell.vesicle transport
0.737267385
0.003593151
ALPHA-ADR (ALPHA-ADAPTIN); binding / structural molecule
estExt_fgenesh4_pg.C_LG_VIII0948
AT3G06700
Q9M7X7
29.2.1.2.2.29
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L29
0.738710248
0.003233183
60S ribosomal protein L29 (RPL29A)
gw1.VII.769.1
AT1G30890
Q94BQ9
35.1
not assigned.no ontology
0.739206637
0.003172588
integral membrane HRF1 family protein
gw1.I.5773.1
AT2G17420
Q39242
21.1
redox.thioredoxin
0.739294637
0.004248294
NTRA (NADPH-dependent thioredoxin reductase 2)
NADPH-dependent thioredoxin reductase, major cytosolic isoform
estExt_fgenesh4_pg.C_LG_XIV0697
AT1G02870
Q8RWK5
35.2
not assigned.unknown
0.740495807
0.002252208
grail3.0005049701
AT4G00100
P59224
29.2.1.2.1.13
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S13
0.74082215
0.003132666
ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of ribosome
Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
grail3.0001025501
AT4G38460
Q39108
16.1.1.10
secondary metabolism.isoprenoids.non-mevalonate pathway.geranylgeranyl pyrophosphate synthase
0.744061405
0.001289615
GGR (GERANYLGERANYL REDUCTASE); farnesyltranstransferase
estExt_fgenesh4_pg.C_LG_X1324
AT5G49480
Q9FDX6
30.3
signalling.calcium
0.752709208
0.002785508
ATCP1 (CA2+-BINDING PROTEIN 1); calcium ion binding
AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl.
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