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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
gw1.VIII.1857.1
AT1G67430
P51413
29.2.1.2.2.17
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17
0.886283246
0.000928872
60S ribosomal protein L17 (RPL17B)
eugene3.00002535
AT5G48580
Q38936
31.3.1
cell.cycle.peptidylprolyl isomerase
0.889408596
0.00087642
FKBP15-2 (FK506-binding protein 15 kD-2); FK506 binding / peptidyl-prolyl cis-trans isomerase
immunophilin (FKBP15-2)
eugene3.00010207
AT3G12390
Q9LHG9
29.2.4
protein.synthesis.elongation
0.889517707
0.00135088
nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative
estExt_fgenesh4_pg.C_LG_III1004
AT2G36620
Q42347
29.2.1.2.2.24
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L24
0.891547639
0.001856804
RPL24A (RIBOSOMAL PROTEIN L24); structural constituent of ribosome
RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).
estExt_Genewise1_v1.C_LG_X3287
AT5G64140
P34789
29.2.1.2.1.28
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S28
0.892493346
0.003101001
RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome
Encodes a putative ribosomal protein S28.
estExt_fgenesh4_pm.C_LG_XV0026
AT2G36170
B9DHA6
29.2.1.2.2.40
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L40
0.712457552
0.001720384
ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)
estExt_fgenesh4_pg.C_640120
AT3G13720
Q9LIC6
30.5
signalling.G-proteins
0.712692121
0.003350442
prenylated rab acceptor (PRA1) family protein
estExt_fgenesh4_pm.C_LG_XVIII0041
AT4G26210
Q9STR3
9.9
mitochondrial electron transport / ATP synthesis.F1-ATPase
0.713842943
0.004241989
mitochondrial ATP synthase g subunit family protein
grail3.0071006401
AT2G42610
Q9S7R3
35.2
not assigned.unknown
0.717979751
0.003445365
grail3.0003061401
AT5G41470
Q5BPI1
35.2
not assigned.unknown
0.718126032
0.002976526
grail3.0071003601
AT2G42740
P42795
29.2.1.2.2.16
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L16
0.720658385
0.00252436
RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome
encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.
estExt_fgenesh4_pm.C_LG_I0800
AT3G47340
P49078
13.1.3.1.1
amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase
0.72136284
0.00333596
ASN1 (DARK INDUCIBLE 6)
encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the genes expression pattern is responding to the level of sugar in the cell.
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