Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
gw1.VIII.1857.1 | AT1G67430 | P51413 | 29.2.1.2.2.17 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L17 | 0.886283246 | 0.000928872 | 60S ribosomal protein L17 (RPL17B) | |
eugene3.00002535 | AT5G48580 | Q38936 | 31.3.1 | cell.cycle.peptidylprolyl isomerase | 0.889408596 | 0.00087642 | FKBP15-2 (FK506-binding protein 15 kD-2); FK506 binding / peptidyl-prolyl cis-trans isomerase | immunophilin (FKBP15-2) |
eugene3.00010207 | AT3G12390 | Q9LHG9 | 29.2.4 | protein.synthesis.elongation | 0.889517707 | 0.00135088 | nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative | |
estExt_fgenesh4_pg.C_LG_III1004 | AT2G36620 | Q42347 | 29.2.1.2.2.24 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L24 | 0.891547639 | 0.001856804 | RPL24A (RIBOSOMAL PROTEIN L24); structural constituent of ribosome | RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020). |
estExt_Genewise1_v1.C_LG_X3287 | AT5G64140 | P34789 | 29.2.1.2.1.28 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S28 | 0.892493346 | 0.003101001 | RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome | Encodes a putative ribosomal protein S28. |
estExt_fgenesh4_pm.C_LG_XV0026 | AT2G36170 | B9DHA6 | 29.2.1.2.2.40 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L40 | 0.712457552 | 0.001720384 | ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A) | |
estExt_fgenesh4_pg.C_640120 | AT3G13720 | Q9LIC6 | 30.5 | signalling.G-proteins | 0.712692121 | 0.003350442 | prenylated rab acceptor (PRA1) family protein | |
estExt_fgenesh4_pm.C_LG_XVIII0041 | AT4G26210 | Q9STR3 | 9.9 | mitochondrial electron transport / ATP synthesis.F1-ATPase | 0.713842943 | 0.004241989 | mitochondrial ATP synthase g subunit family protein | |
grail3.0071006401 | AT2G42610 | Q9S7R3 | 35.2 | not assigned.unknown | 0.717979751 | 0.003445365 | ||
grail3.0003061401 | AT5G41470 | Q5BPI1 | 35.2 | not assigned.unknown | 0.718126032 | 0.002976526 | ||
grail3.0071003601 | AT2G42740 | P42795 | 29.2.1.2.2.16 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L16 | 0.720658385 | 0.00252436 | RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome | encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. |
estExt_fgenesh4_pm.C_LG_I0800 | AT3G47340 | P49078 | 13.1.3.1.1 | amino acid metabolism.synthesis.aspartate family.asparagine.asparagine synthetase | 0.72136284 | 0.00333596 | ASN1 (DARK INDUCIBLE 6) | encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the genes expression pattern is responding to the level of sugar in the cell. |