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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pg.C_LG_I0621
AT5G47870
Q9FIJ4
35.2
not assigned.unknown
0.863455539
0.003420063
eugene3.00150636
AT2G19750
29.2.1.2.1.30
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S30
0.864470177
0.002261494
40S ribosomal protein S30 (RPS30A)
eugene3.00090110
AT3G20770
O24606
27.3.19
RNA.regulation of transcription.EIN3-like(EIL) transcription factor family
0.865379208
0.001166206
EIN3 (ETHYLENE-INSENSITIVE3); transcription factor
ethylene-insensitive3
estExt_Genewise1_v1.C_LG_I2268
AT5G64400
Q9FME9
35.2
not assigned.unknown
0.869857556
0.000844395
eugene3.00400171
AT1G47750
Q9FZF1
31.1
cell.organisation
0.870487434
0.001995953
peroxisomal biogenesis factor 11 family protein / PEX11 family protein
member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.
estExt_Genewise1_v1.C_LG_II1812
AT2G47110
P59232
29.5.11
protein.degradation.ubiquitin
0.87359681
0.001800362
UBQ6 (ubiquitin 6); protein binding
polyubiquitin gene
estExt_fgenesh4_pg.C_LG_I0594
AT3G61110
Q9M2F1
29.2.1.2.1.27
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S27
0.873811005
0.003825464
ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome
Arabidopsis ribosomal protein
grail3.0054016801
AT5G40690
Q9FM29
35.2
not assigned.unknown
0.87696667
0.003327559
estExt_fgenesh4_pm.C_LG_IV0113
AT2G34480
P51418
29.2.1.2.2.518
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18A
0.878186685
0.001646855
60S ribosomal protein L18A (RPL18aB)
estExt_fgenesh4_pm.C_LG_XV0178
AT5G35530
Q9FJA6
29.2.1.2.1.3
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3
0.878282574
0.001257451
40S ribosomal protein S3 (RPS3C)
estExt_fgenesh4_pg.C_LG_I2562
AT1G49760
Q9FXA2
27.1
RNA.processing
0.880566966
0.001619684
PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor
polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.
estExt_fgenesh4_pg.C_2320014
AT2G47110
P59232
29.5.11
protein.degradation.ubiquitin
0.883700513
0.001255995
UBQ6 (ubiquitin 6); protein binding
polyubiquitin gene
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