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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00102124
AT1G07920
Q0WL56
29.2.4
protein.synthesis.elongation
0.839811496
0.002713525
elongation factor 1-alpha / EF-1-alpha
gw1.70.235.1
AT4G34670
Q42262
29.2.1.2.1.53
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3A
0.840424876
0.002670808
40S ribosomal protein S3A (RPS3aB)
estExt_fgenesh4_pg.C_LG_III0436
AT1G52150
Q9ZU11
27.3.22
RNA.regulation of transcription.HB,Homeobox transcription factor family
0.840461453
0.00232935
ATHB-15 (INCURVATA 4); DNA binding / transcription factor
Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.
fgenesh4_pg.C_scaffold_166000032
AT2G20060
Q8VY61
29.2.1.1.3.2.4
protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L4
0.844053344
0.002265028
ribosomal protein L4 family protein
eugene3.00160841
AT3G53230
Q9SCN8
31.2
cell.division
0.848464978
0.002248143
cell division cycle protein 48, putative / CDC48, putative
fgenesh4_pg.C_LG_XVI001328
AT5G01950
F4KAX4
30.2.8.1
signalling.receptor kinases.leucine rich repeat VIII.VIII-1
0.850743478
0.002324132
ATP binding / kinase/ protein serine/threonine kinase
estExt_fgenesh4_pg.C_LG_X1353
AT3G17210
Q9LUV2
20.1.7
stress.biotic.PR-proteins
0.857543317
0.000716116
stable protein 1-related
estExt_Genewise1_v1.C_LG_XVI2405
AT5G39850
Q9FLF0
29.2.1.2.1.9
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S9
0.859454317
0.001373153
40S ribosomal protein S9 (RPS9C)
estExt_Genewise1_v1.C_LG_VIII1052
AT5G03300
Q9LZG0
23.3.2.1
nucleotide metabolism.salvage.nucleoside kinases.adenosine kinase
0.861255388
0.001232702
ADK2 (ADENOSINE KINASE 2); kinase
Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion.
estExt_Genewise1_v1.C_LG_VI1074
AT3G43810
P59220
30.3
signalling.calcium
0.861683296
0.001879744
CAM7 (CALMODULIN 7); calcium ion binding
EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.
eugene3.00070145
AT2G43460
29.2.1.2.2.38
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L38
0.86213593
0.003199697
60S ribosomal protein L38 (RPL38A)
estExt_Genewise1_v1.C_LG_XIV3119
AT2G19750
29.2.1.2.1.30
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S30
0.862267233
0.001497886
40S ribosomal protein S30 (RPS30A)
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