Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00102124 | AT1G07920 | Q0WL56 | 29.2.4 | protein.synthesis.elongation | 0.839811496 | 0.002713525 | elongation factor 1-alpha / EF-1-alpha | |
gw1.70.235.1 | AT4G34670 | Q42262 | 29.2.1.2.1.53 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3A | 0.840424876 | 0.002670808 | 40S ribosomal protein S3A (RPS3aB) | |
estExt_fgenesh4_pg.C_LG_III0436 | AT1G52150 | Q9ZU11 | 27.3.22 | RNA.regulation of transcription.HB,Homeobox transcription factor family | 0.840461453 | 0.00232935 | ATHB-15 (INCURVATA 4); DNA binding / transcription factor | Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. |
fgenesh4_pg.C_scaffold_166000032 | AT2G20060 | Q8VY61 | 29.2.1.1.3.2.4 | protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L4 | 0.844053344 | 0.002265028 | ribosomal protein L4 family protein | |
eugene3.00160841 | AT3G53230 | Q9SCN8 | 31.2 | cell.division | 0.848464978 | 0.002248143 | cell division cycle protein 48, putative / CDC48, putative | |
fgenesh4_pg.C_LG_XVI001328 | AT5G01950 | F4KAX4 | 30.2.8.1 | signalling.receptor kinases.leucine rich repeat VIII.VIII-1 | 0.850743478 | 0.002324132 | ATP binding / kinase/ protein serine/threonine kinase | |
estExt_fgenesh4_pg.C_LG_X1353 | AT3G17210 | Q9LUV2 | 20.1.7 | stress.biotic.PR-proteins | 0.857543317 | 0.000716116 | stable protein 1-related | |
estExt_Genewise1_v1.C_LG_XVI2405 | AT5G39850 | Q9FLF0 | 29.2.1.2.1.9 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S9 | 0.859454317 | 0.001373153 | 40S ribosomal protein S9 (RPS9C) | |
estExt_Genewise1_v1.C_LG_VIII1052 | AT5G03300 | Q9LZG0 | 23.3.2.1 | nucleotide metabolism.salvage.nucleoside kinases.adenosine kinase | 0.861255388 | 0.001232702 | ADK2 (ADENOSINE KINASE 2); kinase | Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion. |
estExt_Genewise1_v1.C_LG_VI1074 | AT3G43810 | P59220 | 30.3 | signalling.calcium | 0.861683296 | 0.001879744 | CAM7 (CALMODULIN 7); calcium ion binding | EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant. |
eugene3.00070145 | AT2G43460 | 29.2.1.2.2.38 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L38 | 0.86213593 | 0.003199697 | 60S ribosomal protein L38 (RPL38A) | ||
estExt_Genewise1_v1.C_LG_XIV3119 | AT2G19750 | 29.2.1.2.1.30 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S30 | 0.862267233 | 0.001497886 | 40S ribosomal protein S30 (RPS30A) |