Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
estExt_Genewise1_v1.C_LG_X2288 | AT5G65750 | Q9FLH2 | 8.1.5 | TCA / org transformation.TCA.2-oxoglutarate dehydrogenase | 0.817421828 | 0.001099166 | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative | |
grail3.0033024301 | AT3G10950 | Q9SRK6 | 29.2.1.2.2.537 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37A | 0.81773782 | 0.001773443 | 60S ribosomal protein L37a (RPL37aB) | |
gw1.XII.1352.1 | AT1G23380 | Q84JS6 | 27.3.22 | RNA.regulation of transcription.HB,Homeobox transcription factor family | 0.819268989 | 0.002448314 | KNAT6 (Knotted-like Arabidopsis thaliana 6); DNA binding / transcription factor | homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants. |
eugene3.00070821 | AT1G56070 | 29.2.4 | protein.synthesis.elongation | 0.820091518 | 0.001378428 | LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding | encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. | |
gw1.VIII.9.1 | AT5G19990 | Q9C5U3 | 29.5.11.20 | protein.degradation.ubiquitin.proteasom | 0.825522139 | 0.003595489 | ATSUG1; ATPase | member of conserved Sug1 CAD family |
estExt_fgenesh4_pg.C_LG_VII0715 | AT3G23390 | 29.2.1.2.2.536 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L36A | 0.82617877 | 0.00198537 | 60S ribosomal protein L36a/L44 (RPL36aA) | ||
gw1.VI.50.1 | AT5G11280 | Q94AQ7 | 35.2 | not assigned.unknown | 0.828938166 | 0.001424864 | ||
estExt_fgenesh4_kg.C_440007 | AT4G25740 | Q9SW09 | 29.2.1.2.1.10 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S10 | 0.83241618 | 0.002121571 | 40S ribosomal protein S10 (RPS10A) | |
estExt_Genewise1_v1.C_LG_I3343 | AT4G13940 | O23255 | 13.2.3.4 | amino acid metabolism.degradation.aspartate family.methionine | 0.832655927 | 0.00305973 | HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase | Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. |
eugene3.00170157 | AT2G32730 | O48844 | 29.5.11.20 | protein.degradation.ubiquitin.proteasom | 0.832885165 | 0.001574457 | 26S proteasome regulatory subunit, putative | |
estExt_Genewise1_v1.C_LG_III0024 | AT3G49010 | P41127 | 29.2.1.2.2.13 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13 | 0.834322718 | 0.002167815 | ATBBC1 (breast basic conserved 1); structural constituent of ribosome | Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). |
estExt_Genewise1_v1.C_1240101 | AT4G27470 | Q8GUK7 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 0.838256591 | 0.003386745 | zinc finger (C3HC4-type RING finger) family protein |