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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_Genewise1_v1.C_LG_X2288
AT5G65750
Q9FLH2
8.1.5
TCA / org transformation.TCA.2-oxoglutarate dehydrogenase
0.817421828
0.001099166
2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative
grail3.0033024301
AT3G10950
Q9SRK6
29.2.1.2.2.537
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L37A
0.81773782
0.001773443
60S ribosomal protein L37a (RPL37aB)
gw1.XII.1352.1
AT1G23380
Q84JS6
27.3.22
RNA.regulation of transcription.HB,Homeobox transcription factor family
0.819268989
0.002448314
KNAT6 (Knotted-like Arabidopsis thaliana 6); DNA binding / transcription factor
homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.
eugene3.00070821
AT1G56070
29.2.4
protein.synthesis.elongation
0.820091518
0.001378428
LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding
encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.
gw1.VIII.9.1
AT5G19990
Q9C5U3
29.5.11.20
protein.degradation.ubiquitin.proteasom
0.825522139
0.003595489
ATSUG1; ATPase
member of conserved Sug1 CAD family
estExt_fgenesh4_pg.C_LG_VII0715
AT3G23390
29.2.1.2.2.536
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L36A
0.82617877
0.00198537
60S ribosomal protein L36a/L44 (RPL36aA)
gw1.VI.50.1
AT5G11280
Q94AQ7
35.2
not assigned.unknown
0.828938166
0.001424864
estExt_fgenesh4_kg.C_440007
AT4G25740
Q9SW09
29.2.1.2.1.10
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S10
0.83241618
0.002121571
40S ribosomal protein S10 (RPS10A)
estExt_Genewise1_v1.C_LG_I3343
AT4G13940
O23255
13.2.3.4
amino acid metabolism.degradation.aspartate family.methionine
0.832655927
0.00305973
HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase
Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.
eugene3.00170157
AT2G32730
O48844
29.5.11.20
protein.degradation.ubiquitin.proteasom
0.832885165
0.001574457
26S proteasome regulatory subunit, putative
estExt_Genewise1_v1.C_LG_III0024
AT3G49010
P41127
29.2.1.2.2.13
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13
0.834322718
0.002167815
ATBBC1 (breast basic conserved 1); structural constituent of ribosome
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
estExt_Genewise1_v1.C_1240101
AT4G27470
Q8GUK7
29.5.11.4.2
protein.degradation.ubiquitin.E3.RING
0.838256591
0.003386745
zinc finger (C3HC4-type RING finger) family protein
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