top of page

Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
gw1.IX.4167.1
AT2G29060
P0C883
33.99
development.unspecified
0.965829053
0.003268686
scarecrow transcription factor family protein
estExt_fgenesh4_pm.C_LG_II0453
AT1G22410
Q9SK84
13.1.6.1.1
amino acid metabolism.synthesis.aromatic aa.chorismate.3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
0.96690875
0.003725376
2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative
fgenesh4_pm.C_LG_X000154
AT4G13510
P54144
34.5
transport.ammonium
0.966949351
0.001274677
AMT1;1 (AMMONIUM TRANSPORT 1); ammonium transporter
Encodes a plasma membrane localized ammonium transporter.
estExt_fgenesh4_kg.C_LG_XIV0024
AT2G47640
27.1
RNA.processing
0.810758556
0.003127541
small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative
estExt_fgenesh4_kg.C_LG_X0057
AT5G46020
35.2
not assigned.unknown
0.81224867
0.002595674
estExt_fgenesh4_pg.C_LG_XIX0927
AT3G10860
Q9SG91
9.5
mitochondrial electron transport / ATP synthesis.cytochrome c reductase
0.812811678
0.002891934
ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative
estExt_Genewise1_v1.C_LG_I1353
AT3G46440
Q9SN95
10.1.5
cell wall.precursor synthesis.UXS
0.812946902
0.003319982
UXS5 (UDP-Xyl synthase 5); catalytic
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
estExt_fgenesh4_pm.C_LG_XVI0204
AT5G64140
P34789
29.2.1.2.1.28
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S28
0.814255466
0.002938362
RPS28 (RIBOSOMAL PROTEIN S28); structural constituent of ribosome
Encodes a putative ribosomal protein S28.
grail3.0072001304
AT4G18100
P49211
29.2.1.2.2.32
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L32
0.814518509
0.002963399
60S ribosomal protein L32 (RPL32A)
estExt_fgenesh4_pm.C_LG_III0216
AT3G49910
P51414
29.2.1.2.2.26
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L26
0.81485295
0.00362046
60S ribosomal protein L26 (RPL26A)
estExt_Genewise1_v1.C_LG_II0811
AT4G27090
Q9T043
29.2.1.2.2.14
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L14
0.81491532
0.002454308
60S ribosomal protein L14 (RPL14B)
eugene3.00080140
AT5G04800
Q9LZ17
29.2.1.2.1.17
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S17
0.815849229
0.001687966
40S ribosomal protein S17 (RPS17D)
bottom of page