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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
gw1.I.9457.1
AT5G20620
P0CH32
29.5.11.1
protein.degradation.ubiquitin.ubiquitin
0.952056592
0.001344123
UBQ4 (ubiquitin 4); protein binding
encodes a ubiquitin polyprotein.
eugene3.00161069
AT5G01210
Q9LFB5
16.2
secondary metabolism.phenylpropanoids
0.952770258
0.003215626
transferase family protein
fgenesh4_pg.C_LG_III000191
AT3G13930
Q8RWN9
8.1.1.2
TCA / org transformation.TCA.pyruvate DH.E2
0.953233576
0.000738417
dihydrolipoamide S-acetyltransferase, putative
eugene3.00130126
AT3G05590
P42791
29.2.1.2.2.18
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18
0.954863893
0.00129997
RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome
Encodes cytoplasmic ribosomal protein L18.
gw1.XIV.2623.1
AT1G02900
Q9SRY3
30.8
signalling.misc
0.958699837
0.002681081
RALFL1 (RALF-LIKE 1)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
estExt_fgenesh4_pm.C_LG_I0760
AT5G56710
P51420
29.2.1.2.2.31
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L31
0.959181875
0.001407806
60S ribosomal protein L31 (RPL31C)
eugene3.00091453
AT3G52580
P42036
29.2.1.2.1.14
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S14
0.959763931
0.001673894
40S ribosomal protein S14 (RPS14C)
eugene3.01450028
AT4G29520
Q9SU93
35.2
not assigned.unknown
0.96064176
0.000279317
eugene3.00041306
AT2G21160
P45434
35.1
not assigned.no ontology
0.961853797
0.002697347
translocon-associated protein alpha (TRAP alpha) family protein
eugene3.01230072
AT3G02520
Q96300
30.7
signalling.14-3-3 proteins
0.962112199
0.002866994
GRF7 (General regulatory factor 7); protein phosphorylated amino acid binding
Encodes GF14 &957;, a 14-3-3 protein isoform (14-3-3&957;).
estExt_fgenesh4_pm.C_LG_I0969
AT4G13930
O23254
25.1
C1-metabolism.glycine hydroxymethyltransferase
0.962184222
0.002590269
SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase
Encodes a serine hydroxymethyltransferase maximally expressed in root
eugene3.01640075
AT5G60670
Q9FF52
29.2.1.2.2.12
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L12
0.964638133
0.002241689
60S ribosomal protein L12 (RPL12C)
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