Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
gw1.I.9457.1 | AT5G20620 | P0CH32 | 29.5.11.1 | protein.degradation.ubiquitin.ubiquitin | 0.952056592 | 0.001344123 | UBQ4 (ubiquitin 4); protein binding | encodes a ubiquitin polyprotein. |
eugene3.00161069 | AT5G01210 | Q9LFB5 | 16.2 | secondary metabolism.phenylpropanoids | 0.952770258 | 0.003215626 | transferase family protein | |
fgenesh4_pg.C_LG_III000191 | AT3G13930 | Q8RWN9 | 8.1.1.2 | TCA / org transformation.TCA.pyruvate DH.E2 | 0.953233576 | 0.000738417 | dihydrolipoamide S-acetyltransferase, putative | |
eugene3.00130126 | AT3G05590 | P42791 | 29.2.1.2.2.18 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L18 | 0.954863893 | 0.00129997 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome | Encodes cytoplasmic ribosomal protein L18. |
gw1.XIV.2623.1 | AT1G02900 | Q9SRY3 | 30.8 | signalling.misc | 0.958699837 | 0.002681081 | RALFL1 (RALF-LIKE 1) | Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. |
estExt_fgenesh4_pm.C_LG_I0760 | AT5G56710 | P51420 | 29.2.1.2.2.31 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L31 | 0.959181875 | 0.001407806 | 60S ribosomal protein L31 (RPL31C) | |
eugene3.00091453 | AT3G52580 | P42036 | 29.2.1.2.1.14 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S14 | 0.959763931 | 0.001673894 | 40S ribosomal protein S14 (RPS14C) | |
eugene3.01450028 | AT4G29520 | Q9SU93 | 35.2 | not assigned.unknown | 0.96064176 | 0.000279317 | ||
eugene3.00041306 | AT2G21160 | P45434 | 35.1 | not assigned.no ontology | 0.961853797 | 0.002697347 | translocon-associated protein alpha (TRAP alpha) family protein | |
eugene3.01230072 | AT3G02520 | Q96300 | 30.7 | signalling.14-3-3 proteins | 0.962112199 | 0.002866994 | GRF7 (General regulatory factor 7); protein phosphorylated amino acid binding | Encodes GF14 &957;, a 14-3-3 protein isoform (14-3-3&957;). |
estExt_fgenesh4_pm.C_LG_I0969 | AT4G13930 | O23254 | 25.1 | C1-metabolism.glycine hydroxymethyltransferase | 0.962184222 | 0.002590269 | SHM4 (SERINE HYDROXYMETHYLTRANSFERASE 4); glycine hydroxymethyltransferase | Encodes a serine hydroxymethyltransferase maximally expressed in root |
eugene3.01640075 | AT5G60670 | Q9FF52 | 29.2.1.2.2.12 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L12 | 0.964638133 | 0.002241689 | 60S ribosomal protein L12 (RPL12C) |