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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0018023901
AT4G11820
P54873
16.1.2.2
secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA synthase
1.782933384
0.001039251
BAP1 (hydroxymethylglutaryl-CoA synthase)
Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant.
grail3.0055008002
AT4G27270
Q6NQE2
11.8
lipid metabolism.'exotics'(steroids, squalene etc)
1.786026576
0.00035952
quinone reductase family protein
estExt_fgenesh4_pm.C_1230010
AT3G02360
Q9FWA3
7.1.3
OPP.oxidative PP.6-phosphogluconate dehydrogenase
1.797127843
0.000702691
6-phosphogluconate dehydrogenase family protein
estExt_Genewise1_v1.C_LG_II0799
AT5G42800
P51102
16.8.3.1
secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase
1.818976687
0.001211493
DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase
dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.
gw1.131.45.1
AT3G62020
Q9M263
20.2.99
stress.abiotic.unspecified
1.82091624
0.0000954
GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / metal ion binding / nutrient reservoir
germin-like protein (GLP10)
estExt_Genewise1_v1.C_280658
AT2G37040
P35510
16.2.1.1
secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL
1.830293095
0.000879196
PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase
encodes a protein similar to phenylalanine ammonia-lyase
estExt_fgenesh4_pm.C_LG_I1023
AT4G34050
O49499
16.2.1.6
secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT
1.832029745
0.00354435
caffeoyl-CoA 3-O-methyltransferase, putative
estExt_Genewise1_v1.C_LG_IV3894
AT3G02720
Q9M8R4
35.1
not assigned.no ontology
1.835552622
0.002029597
DJ-1 family protein / protease-related
eugene3.00180672
AT5G24105
Q8L9T8
35.2
not assigned.unknown
1.855190001
0.003317554
AGP41
Encodes a putative arabinogalactan-protein (AGP41).
grail3.0092008201
AT2G38470
Q8S8P5
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
1.869543236
0.000524977
WRKY33 (WRKY DNA-binding protein 33); transcription factor
Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens.
gw1.II.2573.1
AT3G19580
Q9SSW2
27.3.11
RNA.regulation of transcription.C2H2 zinc finger family
1.873219437
0.001638316
AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding
Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor.
eugene3.00150904
AT5G07440
Q38946
12.3.1
N-metabolism.N-degradation.glutamate dehydrogenase
1.903723715
0.00015378
GDH2 (GLUTAMATE DEHYDROGENASE 2); oxidoreductase
Encodes the alpha-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.
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