Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
grail3.0018023901 | AT4G11820 | P54873 | 16.1.2.2 | secondary metabolism.isoprenoids.mevalonate pathway.HMG-CoA synthase | 1.782933384 | 0.001039251 | BAP1 (hydroxymethylglutaryl-CoA synthase) | Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant. |
grail3.0055008002 | AT4G27270 | Q6NQE2 | 11.8 | lipid metabolism.'exotics'(steroids, squalene etc) | 1.786026576 | 0.00035952 | quinone reductase family protein | |
estExt_fgenesh4_pm.C_1230010 | AT3G02360 | Q9FWA3 | 7.1.3 | OPP.oxidative PP.6-phosphogluconate dehydrogenase | 1.797127843 | 0.000702691 | 6-phosphogluconate dehydrogenase family protein | |
estExt_Genewise1_v1.C_LG_II0799 | AT5G42800 | P51102 | 16.8.3.1 | secondary metabolism.flavonoids.dihydroflavonols.dihydroflavonol 4-reductase | 1.818976687 | 0.001211493 | DFR (DIHYDROFLAVONOL 4-REDUCTASE); dihydrokaempferol 4-reductase | dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. |
gw1.131.45.1 | AT3G62020 | Q9M263 | 20.2.99 | stress.abiotic.unspecified | 1.82091624 | 0.0000954 | GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / metal ion binding / nutrient reservoir | germin-like protein (GLP10) |
estExt_Genewise1_v1.C_280658 | AT2G37040 | P35510 | 16.2.1.1 | secondary metabolism.phenylpropanoids.lignin biosynthesis.PAL | 1.830293095 | 0.000879196 | PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase | encodes a protein similar to phenylalanine ammonia-lyase |
estExt_fgenesh4_pm.C_LG_I1023 | AT4G34050 | O49499 | 16.2.1.6 | secondary metabolism.phenylpropanoids.lignin biosynthesis.CCoAOMT | 1.832029745 | 0.00354435 | caffeoyl-CoA 3-O-methyltransferase, putative | |
estExt_Genewise1_v1.C_LG_IV3894 | AT3G02720 | Q9M8R4 | 35.1 | not assigned.no ontology | 1.835552622 | 0.002029597 | DJ-1 family protein / protease-related | |
eugene3.00180672 | AT5G24105 | Q8L9T8 | 35.2 | not assigned.unknown | 1.855190001 | 0.003317554 | AGP41 | Encodes a putative arabinogalactan-protein (AGP41). |
grail3.0092008201 | AT2G38470 | Q8S8P5 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 1.869543236 | 0.000524977 | WRKY33 (WRKY DNA-binding protein 33); transcription factor | Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. |
gw1.II.2573.1 | AT3G19580 | Q9SSW2 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 1.873219437 | 0.001638316 | AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding | Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. |
eugene3.00150904 | AT5G07440 | Q38946 | 12.3.1 | N-metabolism.N-degradation.glutamate dehydrogenase | 1.903723715 | 0.00015378 | GDH2 (GLUTAMATE DEHYDROGENASE 2); oxidoreductase | Encodes the alpha-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells. |