Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.00141104 | AT1G62480 | Q9SXE9 | 30.3 | signalling.calcium | 0.934890358 | 0.001343449 | vacuolar calcium-binding protein-related | |
gw1.XII.444.1 | AT3G48050 | F4JCS8 | 27.3.99 | RNA.regulation of transcription.unclassified | 0.934990162 | 0.003496368 | bromo-adjacent homology (BAH) domain-containing protein | |
estExt_fgenesh4_pg.C_LG_VI1428 | AT1G53750 | Q9SSB5 | 29.5.11.20 | protein.degradation.ubiquitin.proteasom | 0.93516828 | 0.002830084 | RPT1A (regulatory particle triple-A 1A); ATPase | 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA, |
gw1.133.103.1 | AT3G05560 | Q9M9W1 | 29.2.1.2.2.22 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L22 | 0.93646553 | 0.00125678 | 60S ribosomal protein L22-2 (RPL22B) | |
grail3.0154005402 | AT1G79550 | Q9SAJ4 | 4.1.11 | glycolysis.cytosolic branch.3-phosphoglycerate kinase (PGK) | 0.937396026 | 0.000608393 | PGK (PHOSPHOGLYCERATE KINASE) | Encodes cytosolic phosphoglycerate kinase (PGK). |
estExt_Genewise1_v1.C_LG_XVI2564 | AT3G49010 | P41127 | 29.2.1.2.2.13 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13 | 0.943168434 | 0.001000105 | ATBBC1 (breast basic conserved 1); structural constituent of ribosome | Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). |
eugene3.00190574 | AT3G56340 | Q9LYK9 | 29.2.1.2.1.26 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S26 | 0.945609287 | 0.001325233 | 40S ribosomal protein S26 (RPS26C) | |
estExt_fgenesh4_pg.C_LG_I2557 | AT2G09990 | Q9SK22 | 29.2.1.2.1.16 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16 | 0.945960169 | 0.002050903 | 40S ribosomal protein S16 (RPS16A) | |
estExt_Genewise1_v1.C_440299 | AT3G13882 | F4JEK7 | 29.2.1.1.3.2.34 | protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L34 | 0.946819919 | 0.002101042 | structural constituent of ribosome | |
eugene3.00060200 | AT4G15000 | P51419 | 29.2.1.2.2.27 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27 | 0.948774044 | 0.001607148 | 60S ribosomal protein L27 (RPL27C) | |
estExt_fgenesh4_pg.C_LG_II0398 | AT1G04270 | Q08112 | 29.2.1.2.1.15 | protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15 | 0.951742853 | 0.002660647 | RPS15 (RIBOSOMAL PROTEIN S15); structural constituent of ribosome | Encodes cytosolic ribosomal protein S15. |
estExt_Genewise1_v1.C_LG_X0562 | AT3G06700 | Q9M7X7 | 29.2.1.2.2.29 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L29 | 0.951999158 | 0.002057088 | 60S ribosomal protein L29 (RPL29A) |