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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.00141104
AT1G62480
Q9SXE9
30.3
signalling.calcium
0.934890358
0.001343449
vacuolar calcium-binding protein-related
gw1.XII.444.1
AT3G48050
F4JCS8
27.3.99
RNA.regulation of transcription.unclassified
0.934990162
0.003496368
bromo-adjacent homology (BAH) domain-containing protein
estExt_fgenesh4_pg.C_LG_VI1428
AT1G53750
Q9SSB5
29.5.11.20
protein.degradation.ubiquitin.proteasom
0.93516828
0.002830084
RPT1A (regulatory particle triple-A 1A); ATPase
26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,
gw1.133.103.1
AT3G05560
Q9M9W1
29.2.1.2.2.22
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L22
0.93646553
0.00125678
60S ribosomal protein L22-2 (RPL22B)
grail3.0154005402
AT1G79550
Q9SAJ4
4.1.11
glycolysis.cytosolic branch.3-phosphoglycerate kinase (PGK)
0.937396026
0.000608393
PGK (PHOSPHOGLYCERATE KINASE)
Encodes cytosolic phosphoglycerate kinase (PGK).
estExt_Genewise1_v1.C_LG_XVI2564
AT3G49010
P41127
29.2.1.2.2.13
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13
0.943168434
0.001000105
ATBBC1 (breast basic conserved 1); structural constituent of ribosome
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
eugene3.00190574
AT3G56340
Q9LYK9
29.2.1.2.1.26
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S26
0.945609287
0.001325233
40S ribosomal protein S26 (RPS26C)
estExt_fgenesh4_pg.C_LG_I2557
AT2G09990
Q9SK22
29.2.1.2.1.16
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S16
0.945960169
0.002050903
40S ribosomal protein S16 (RPS16A)
estExt_Genewise1_v1.C_440299
AT3G13882
F4JEK7
29.2.1.1.3.2.34
protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L34
0.946819919
0.002101042
structural constituent of ribosome
eugene3.00060200
AT4G15000
P51419
29.2.1.2.2.27
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27
0.948774044
0.001607148
60S ribosomal protein L27 (RPL27C)
estExt_fgenesh4_pg.C_LG_II0398
AT1G04270
Q08112
29.2.1.2.1.15
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15
0.951742853
0.002660647
RPS15 (RIBOSOMAL PROTEIN S15); structural constituent of ribosome
Encodes cytosolic ribosomal protein S15.
estExt_Genewise1_v1.C_LG_X0562
AT3G06700
Q9M7X7
29.2.1.2.2.29
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L29
0.951999158
0.002057088
60S ribosomal protein L29 (RPL29A)
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