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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pg.C_LG_V1224
AT1G06680
Q42029
1.1.1.2
PS.lightreaction.photosystem II.PSII polypeptide subunits
0.918427955
0.002163002
PSBP-1 (OXYGEN-EVOLVING ENHANCER PROTEIN 2); calcium ion binding
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
estExt_fgenesh4_pg.C_LG_VIII0421
AT5G65750
Q9FLH2
8.1.5
TCA / org transformation.TCA.2-oxoglutarate dehydrogenase
0.91940638
0.002409966
2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative
eugene3.00021350
AT2G45300
P05466
13.1.6.1.6
amino acid metabolism.synthesis.aromatic aa.chorismate.5-enolpyruvylshikimate-3-phosphate synthase
0.922969474
0.003828877
3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase
gw1.IX.3274.1
AT5G13490
P40941
34.14
transport.unspecified cations
0.923771268
0.000803443
AAC2 (ADP/ATP CARRIER 2); ATP:ADP antiporter/ binding
Encodes mitochondrial ADP/ATP carrier
estExt_Genewise1_v1.C_LG_V4766
AT4G31700
O48549
29.2.1.2.1.6
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S6
0.924915524
0.003736795
RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome
Encodes a putative ribosomal protein S6 (rps6).
eugene3.00140347
AT4G01290
Q0WM06
35.2
not assigned.unknown
0.926326922
0.00230002
gw1.I.7425.1
AT2G32060
Q9SKZ3
29.2.1.2.1.12
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S12
0.926813468
0.003081287
40S ribosomal protein S12 (RPS12C)
estExt_Genewise1_v1.C_LG_XV2760
AT1G16470
O23708
29.5
protein.degradation
0.928301272
0.000836039
PAB1 (20S proteasome alpha subunit B1); peptidase
Encodes 20S proteasome subunit PAB1 (PAB1).
estExt_Genewise1_v1.C_LG_II0017
AT4G16720
O23515
29.2.1.2.2.15
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L15
0.931393824
0.002157228
60S ribosomal protein L15 (RPL15A)
eugene3.00082008
AT1G27100
Q0WQH3
35.2
not assigned.unknown
0.931475748
0.00329272
estExt_fgenesh4_pg.C_LG_III0338
AT1G80300
Q39002
34.99
transport.misc
0.931877889
0.00198682
chloroplast ADP, ATP carrier protein 1 / ADP, ATP translocase 1 / adenine nucleotide translocase 1 (AATP1)
estExt_fgenesh4_pg.C_LG_IV0782
AT3G02700
35.1
not assigned.no ontology
0.93282794
0.001667306
NC domain-containing protein
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