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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
grail3.0049009101
AT1G07920
Q0WL56
29.2.4
protein.synthesis.elongation
1.019964324
0.001574974
elongation factor 1-alpha / EF-1-alpha
grail3.0022028404
AT1G07770
A0A178W5N5
29.2.1.2.1.515
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S15A
0.893655435
0.003240298
RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome
Encodes cytoplasmic ribosomal protein S15a.
gw1.XIII.1138.1
AT3G49010
P41127
29.2.1.2.2.13
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L13
0.897308441
0.003669661
ATBBC1 (breast basic conserved 1); structural constituent of ribosome
Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
estExt_Genewise1_v1.C_LG_XVI3171
AT3G02560
Q9M885
29.2.1.2.1.7
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S7
0.898207861
0.001487941
40S ribosomal protein S7 (RPS7B)
estExt_fgenesh4_pm.C_LG_IV0065
AT1G11260
P23586
34.2
transport.sugars
0.901974841
0.000530848
STP1 (SUGAR TRANSPORTER 1); carbohydrate transporter/ sugar porter
Encodes a H+/hexose cotransporter.
eugene3.00400386
AT4G24220
Q9STX2
33.99
development.unspecified
0.90203416
0.001088816
VEP1 (VEIN PATTERNING 1)
encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.
eugene3.00100396
AT1G04560
O23029
34.99
transport.misc
0.90660194
0.001605346
AWPM-19-like membrane family protein
estExt_Genewise1_v1.C_LG_X2037
AT1G07070
Q9LMK0
29.2.1.2.2.535
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L35A
0.906650241
0.003292911
60S ribosomal protein L35a (RPL35aA)
eugene3.00030178
AT2G19730
O82204
29.2.1.2.2.28
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L28
0.911654479
0.001387957
60S ribosomal protein L28 (RPL28A)
gw1.V.1452.1
AT2G37990
Q9SH88
29.2.6
protein.synthesis.ribosomal RNA
0.916060242
0.000917017
ribosome biogenesis regulatory protein (RRS1) family protein
eugene3.00030911
AT3G58630
Q9M2F4
27.3.30
RNA.regulation of transcription.Trihelix, Triple-Helix transcription factor family
0.916390725
0.001104892
transcription factor
estExt_Genewise1_v1.C_1550123
AT3G62870
Q9LZH9
29.2.1.2.2.57
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L7A
0.916629254
0.002691855
60S ribosomal protein L7A (RPL7aB)
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