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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
estExt_fgenesh4_pg.C_LG_XI0796
AT3G53740
Q9M352
29.2.1.2.2.36
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L36
1.007725138
0.001627703
60S ribosomal protein L36 (RPL36B)
estExt_fgenesh4_pg.C_LG_X2153
AT3G23390
29.2.1.2.2.536
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L36A
1.008476164
0.00159
60S ribosomal protein L36a/L44 (RPL36aA)
grail3.0106016302
AT5G04600
Q9LZ65
27.4
RNA.RNA binding
1.010477084
0.00358471
RNA recognition motif (RRM)-containing protein
estExt_fgenesh4_pg.C_660113
AT1G36240
Q9C8F7
29.2.1.2.2.30
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L30
1.012835333
0.002857548
60S ribosomal protein L30 (RPL30A)
estExt_Genewise1_v1.C_LG_IX4171
AT4G25890
Q9SVZ6
29.2.1.2.2.83
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P3
1.013191132
0.000825617
60S acidic ribosomal protein P3 (RPP3A)
grail3.0018042701
AT4G10955
Q680C0
11.9.2.1
lipid metabolism.lipid degradation.lipases.triacylglycerol lipase
1.014092221
0.002072314
lipase class 3 family protein
gw1.XIII.1369.1
AT3G04920
Q9SS17
29.2.1.2.1.24
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S24
1.017055483
0.002157206
40S ribosomal protein S24 (RPS24A)
estExt_Genewise1_v1.C_LG_XI3485
AT2G34250
O80774
29.3.4.99
protein.targeting.secretory pathway.unspecified
1.017781918
0.000338793
protein transport protein sec61, putative
estExt_Genewise1_v1.C_LG_XV2433
AT1G26880
Q42351
29.2.1.2.2.34
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34
1.018402247
0.001636018
60S ribosomal protein L34 (RPL34A)
grail3.6312000101
AT4G31985
29.2.1.2.2.39
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L39
1.019360404
0.001142985
60S ribosomal protein L39 (RPL39C)
grail3.0128002402
AT3G52580
P42036
29.2.1.2.1.14
protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S14
1.019505764
0.002145355
40S ribosomal protein S14 (RPS14C)
fgenesh4_pg.C_LG_V000192
AT4G39830
A0A1P8B4N7
21.2.1
redox.ascorbate and glutathione.ascorbate
1.01957565
0.001270791
L-ascorbate oxidase, putative
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