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Species & Dataset

Experiment

Foliar Ozone Injury

  • Populus trichocarpa

  • Common name: Poplar cottonwood

  • Family: Salicaceae

  • Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides

  • Tissue: Shoot leaves

  • Ozone concentration: 16.7 nL L-1 (Control)

  • 93.1 nL L-1 (Treatment)

  • Ozone exposure: Whole experimental period

  • Sampling time: ​ End of exposure period

  • Platform: Microarray

  • Year of study: 2010

  • Location: UK

poplar injury.jpg

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny

 

Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.

​

Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54

Gene name
AGI code
Uniprot ID
Bin Code
Bin Name
logFoldChange
p-value
Functional annotation
Summary
eugene3.02630001
AT5G51190
Q8VY90
17.5.2
hormone metabolism.ethylene.signal transduction
0.995397822
0.004070322
AP2 domain-containing transcription factor, putative
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
estExt_Genewise1_v1.C_640429
AT2G43460
29.2.1.2.2.38
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L38
1.002462045
0.001963417
60S ribosomal protein L38 (RPL38A)
gw1.XIII.1268.1
AT3G05060
Q9MAB3
29.2.2.3.1
protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.snoRNPs
1.002521547
0.003356714
SAR DNA-binding protein, putative
SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein
estExt_fgenesh4_kg.C_42560001
AT5G60670
Q9FF52
29.2.1.2.2.12
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L12
1.002956284
0.000628218
60S ribosomal protein L12 (RPL12C)
estExt_fgenesh4_pg.C_LG_II1537
AT4G11070
Q8H0Y8
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
1.004021399
0.001143826
WRKY41 (WRKY DNA-binding protein 41); transcription factor
member of WRKY Transcription Factor; Group III
estExt_Genewise1_v1.C_LG_IX4802
AT5G60490
Q8LEE9
10.5.1.1
cell wall.cell wall proteins.AGPs.AGP
1.004481637
0.0007054
FLA12 (fasciclin-like arabinogalactan-protein 12)
estExt_Genewise1_v1.C_LG_I2658
AT4G15000
P51419
29.2.1.2.2.27
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27
1.004694519
0.000919356
60S ribosomal protein L27 (RPL27C)
eugene3.00080776
AT1G79550
Q9SAJ4
4.1.11
glycolysis.cytosolic branch.3-phosphoglycerate kinase (PGK)
1.005047311
0.000317313
PGK (PHOSPHOGLYCERATE KINASE)
Encodes cytosolic phosphoglycerate kinase (PGK).
estExt_Genewise1_v1.C_LG_IV2725
AT3G53740
Q9M352
29.2.1.2.2.36
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L36
1.005301714
0.00091444
60S ribosomal protein L36 (RPL36B)
eugene3.00140509
AT1G01100
Q8LCW9
29.2.1.2.2.81
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P1
1.005952428
0.002435815
60S acidic ribosomal protein P1 (RPP1A)
estExt_fgenesh4_kg.C_LG_VI0025
AT5G60670
Q9FF52
29.2.1.2.2.12
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L12
1.006570063
0.002774689
60S ribosomal protein L12 (RPL12C)
estExt_fgenesh4_pg.C_LG_XII1047
AT1G26880
Q42351
29.2.1.2.2.34
protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34
1.006799769
0.002090305
60S ribosomal protein L34 (RPL34A)
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