Species & Dataset
Experiment
Foliar Ozone Injury
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Populus trichocarpa
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Common name: Poplar cottonwood
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Family: Salicaceae
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Genotype: An inbred F2 mapping population (Family 331), formed from a cross between Populus trichocarpa and P. deltoides
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Tissue: Shoot leaves
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Ozone concentration: 16.7 nL L-1 (Control)
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93.1 nL L-1 (Treatment)
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Ozone exposure: Whole experimental period
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Sampling time: End of exposure period
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Platform: Microarray
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Year of study: 2010
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Location: UK

Title: The physiological, transcriptional and genetic responses of an ozone- sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny
Summary: Relatively little is known about the transcriptional response or genetic control of response and adaptation of trees to tropospheric ozone exposure. Such understanding is needed as up to 50% of forests, globally, may be subjected to phytotoxic concentrations of ozone. The physiological, transcriptional and genetic response to ozone was examined in Populus trichocarpa and P. deltoides, which show extreme sensitivity and tolerance to ozone, respectively. Using an inbred F2 mapping population derived from these two species, we mapped quantitative trait loci (QTL) for traits associated with ozone response, examined segregation of the transcriptional response to ozone and co-located genes showing divergent responses between tolerant and sensitive genotypes with QTL. QTL were identified linking detrimental effects of ozone with leaf and biomass traits and differential responses were found for key genes involved in ethylene production and response.
Reference: Street, N.R., James, T.M., James, T., Mikael, B., Jaakko, K., Mark, B. and Taylor, G., 2011. The physiological, transcriptional and genetic responses of an ozone-sensitive and an ozone tolerant poplar and selected extremes of their F2 progeny. Environmental Pollution, 159(1), pp.45-54
Gene name | AGI code | Uniprot ID | Bin Code | Bin Name | logFoldChange | p-value | Functional annotation | Summary |
|---|---|---|---|---|---|---|---|---|
eugene3.02630001 | AT5G51190 | Q8VY90 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 0.995397822 | 0.004070322 | AP2 domain-containing transcription factor, putative | encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. |
estExt_Genewise1_v1.C_640429 | AT2G43460 | 29.2.1.2.2.38 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L38 | 1.002462045 | 0.001963417 | 60S ribosomal protein L38 (RPL38A) | ||
gw1.XIII.1268.1 | AT3G05060 | Q9MAB3 | 29.2.2.3.1 | protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.snoRNPs | 1.002521547 | 0.003356714 | SAR DNA-binding protein, putative | SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein |
estExt_fgenesh4_kg.C_42560001 | AT5G60670 | Q9FF52 | 29.2.1.2.2.12 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L12 | 1.002956284 | 0.000628218 | 60S ribosomal protein L12 (RPL12C) | |
estExt_fgenesh4_pg.C_LG_II1537 | AT4G11070 | Q8H0Y8 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 1.004021399 | 0.001143826 | WRKY41 (WRKY DNA-binding protein 41); transcription factor | member of WRKY Transcription Factor; Group III |
estExt_Genewise1_v1.C_LG_IX4802 | AT5G60490 | Q8LEE9 | 10.5.1.1 | cell wall.cell wall proteins.AGPs.AGP | 1.004481637 | 0.0007054 | FLA12 (fasciclin-like arabinogalactan-protein 12) | |
estExt_Genewise1_v1.C_LG_I2658 | AT4G15000 | P51419 | 29.2.1.2.2.27 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L27 | 1.004694519 | 0.000919356 | 60S ribosomal protein L27 (RPL27C) | |
eugene3.00080776 | AT1G79550 | Q9SAJ4 | 4.1.11 | glycolysis.cytosolic branch.3-phosphoglycerate kinase (PGK) | 1.005047311 | 0.000317313 | PGK (PHOSPHOGLYCERATE KINASE) | Encodes cytosolic phosphoglycerate kinase (PGK). |
estExt_Genewise1_v1.C_LG_IV2725 | AT3G53740 | Q9M352 | 29.2.1.2.2.36 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L36 | 1.005301714 | 0.00091444 | 60S ribosomal protein L36 (RPL36B) | |
eugene3.00140509 | AT1G01100 | Q8LCW9 | 29.2.1.2.2.81 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P1 | 1.005952428 | 0.002435815 | 60S acidic ribosomal protein P1 (RPP1A) | |
estExt_fgenesh4_kg.C_LG_VI0025 | AT5G60670 | Q9FF52 | 29.2.1.2.2.12 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L12 | 1.006570063 | 0.002774689 | 60S ribosomal protein L12 (RPL12C) | |
estExt_fgenesh4_pg.C_LG_XII1047 | AT1G26880 | Q42351 | 29.2.1.2.2.34 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L34 | 1.006799769 | 0.002090305 | 60S ribosomal protein L34 (RPL34A) |